RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 KCNB2Q92953 911 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 DDX11Q96FC9 970 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 AGBL1Q96MI9 1066 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 RNF208Q9H0X6 261 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 HMX1Q9NP08 348 aaPredicted RBP12.49□□□□□ -0.41
LINC00239-201ENST00000556973 DIS3Q9Y2L1 958 aaKnown RBP12.49□□□□□ -0.41
LINC00239-201ENST00000556973 RPTORQ8N122 1335 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 COBLO75128 1261 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 ICAM1P05362 532 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 GJB1P08034 283 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 HMGB1P09429 215 aaKnown RBP12.48□□□□□ -0.41
LINC00239-201ENST00000556973 LIFRP42702 1097 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 SNAP25P60880 206 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 CCL14Q16627 93 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 MFSD14CQ5VZR4 134 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 CATIPQ7Z7H3 387 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 RASEFQ8IZ41 740 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 TRERF1Q96PN7 1200 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 UBA5Q9GZZ9 404 aa12.48□□□□□ -0.41
LINC00239-201ENST00000556973 CENPFP49454 3210 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 WDR19Q8NEZ3 1342 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 POTEFA5A3E0 1075 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 PALM3A6NDB9 673 aaPredicted RBP12.47□□□□□ -0.41
LINC00239-201ENST00000556973 KLRF2D3W0D1 207 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 EIF5BO60841 1220 aaKnown RBP12.47□□□□□ -0.41
LINC00239-201ENST00000556973 ALAS1P13196 640 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 GJA8P48165 433 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 CACNB2Q08289 660 aaPredicted RBP12.47□□□□□ -0.41
LINC00239-201ENST00000556973 TROAPQ12815 778 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 TRIM32Q13049 653 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 ZNF792Q3KQV3 632 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 MAP3K21Q5TCX8 1036 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 OLFML2BQ68BL8 750 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 DHX32Q7L7V1 743 aaKnown RBP12.47□□□□□ -0.41
LINC00239-201ENST00000556973 ADGRF4Q8IZF3 695 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 ANKRD35Q8N283 1001 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 MAP3K14Q99558 947 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 USP26Q9BXU7 913 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 UNC93B1Q9H1C4 597 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 ACAD9Q9H845 621 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 LY9Q9HBG7 655 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 SENP2Q9HC62 589 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 PAK6Q9NQU5 681 aaPredicted RBP12.47□□□□□ -0.41
LINC00239-201ENST00000556973 FLRT1Q9NZU1 646 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 MAD2L2Q9UI95 211 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 CCPG1Q9ULG6 757 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 MYH6P13533 1939 aa12.47□□□□□ -0.41
LINC00239-201ENST00000556973 HTTP42858 3142 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 DNAJC25-GNG10A0A024R161 153 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 CCDC69A6NI79 296 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 SH2B2O14492 632 aaPredicted RBP12.46□□□□□ -0.41
LINC00239-201ENST00000556973 SGPL1O95470 568 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 IGHA2P01877 340 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 PGK2P07205 417 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 PRKAR2AP13861 404 aaKnown RBP12.46□□□□□ -0.41
LINC00239-201ENST00000556973 EN2P19622 333 aaPredicted RBP12.46□□□□□ -0.41
LINC00239-201ENST00000556973 EXOSC10Q01780 885 aaKnown RBP12.46□□□□□ -0.41
LINC00239-201ENST00000556973 GRM4Q14833 912 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 ADCK5Q3MIX3 580 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 STAG2Q8N3U4 1231 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 MAML3Q96JK9 1138 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.46□□□□□ -0.41
LINC00239-201ENST00000556973 HOMER2Q9NSB8 354 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 RNF146Q9NTX7 359 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 SNX14Q9Y5W7 946 aa12.46□□□□□ -0.41
LINC00239-201ENST00000556973 DHX16O60231 1041 aaKnown RBP12.45□□□□□ -0.42
LINC00239-201ENST00000556973 DDAH1O94760 285 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 CALM1P0DP23 149 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 CALM2P0DP24 149 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 CALM3P0DP25 149 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 NFXL1Q6ZNB6 911 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 ZNF467Q7Z7K2 595 aaPredicted RBP12.45□□□□□ -0.42
LINC00239-201ENST00000556973 ZNF654Q8IZM8 581 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 MSL3Q8N5Y2 521 aaKnown RBP12.45□□□□□ -0.42
LINC00239-201ENST00000556973 CPVLQ9H3G5 476 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 JMJD4Q9H9V9 463 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 VAT1LQ9HCJ6 419 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 GPHNQ9NQX3 736 aaPredicted RBP12.45□□□□□ -0.42
LINC00239-201ENST00000556973 SMCHD1A6NHR9 2005 aa12.45□□□□□ -0.42
LINC00239-201ENST00000556973 PFASO15067 1338 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 TFRCP02786 760 aaKnown RBP12.44□□□□□ -0.42
LINC00239-201ENST00000556973 PSMA5P28066 241 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 SMARCA1P28370 1054 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 KIF5BP33176 963 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 CYP2C19P33261 490 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 MLLT1Q03111 559 aaPredicted RBP12.44□□□□□ -0.42
LINC00239-201ENST00000556973 COL9A3Q14050 684 aaPredicted RBP12.44□□□□□ -0.42
LINC00239-201ENST00000556973 CDC37Q16543 378 aaPredicted RBP12.44□□□□□ -0.42
LINC00239-201ENST00000556973 MUM1L1Q5H9M0 696 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 SYNE3Q6ZMZ3 975 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 SGMS1Q86VZ5 419 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 CTCFLQ8NI51 663 aaPredicted RBP12.44□□□□□ -0.42
LINC00239-201ENST00000556973 U2AF1L4Q8WU68 220 aaKnown RBP12.44□□□□□ -0.42
LINC00239-201ENST00000556973 NUP133Q8WUM0 1156 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 DEFB118Q96PH6 123 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 TINF2Q9BSI4 451 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 MAF1Q9H063 256 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 RIOX1Q9H6W3 641 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 A1CFQ9NQ94 594 aaKnown RBP12.44□□□□□ -0.42
LINC00239-201ENST00000556973 CYP39A1Q9NYL5 469 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms