RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ADCY3O60266 1144 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 MYCP01106 439 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 FCER1AP12319 257 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 ALAS1P13196 640 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 KIF5BP33176 963 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 RGS2P41220 211 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 KCTD2Q14681 263 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 DPP9Q86TI2 863 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 MICU3Q86XE3 530 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 ADGRF4Q8IZF3 695 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 SH3TC2Q8TF17 1288 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 MMP19Q99542 508 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 UPF3BQ9BZI7 483 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 RANBP17Q9H2T7 1088 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 MAD2L2Q9UI95 211 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 GJD2Q9UKL4 321 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 RIPK3Q9Y572 518 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 KLF18A0A0U1RQI7 1052 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 PALM3A6NDB9 673 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 CCDC85CA6NKD9 419 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 STRNO43815 780 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 ICAM1P05362 532 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 CALM1P0DP23 149 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 CALM2P0DP24 149 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 CALM3P0DP25 149 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 ELNP15502 786 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 TAL1P17542 331 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 GRK4P32298 578 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 MAP2K5Q13163 448 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 IRF5Q13568 498 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 CDC37Q16543 378 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 MORN1Q5T089 497 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 RUFY3Q7L099 469 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 NBPF11Q86T75 865 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 SGMS1Q86VZ5 419 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 DDX11Q96FC9 970 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 TRERF1Q96PN7 1200 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 ZSWIM6Q9HCJ5 1215 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 RNF146Q9NTX7 359 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 FBXO40Q9UH90 709 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 ZNF536O15090 1300 aa13.33□□□□□ -0.28
CCDC88C-212ENST00000556767 PLXNB2O15031 1838 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 ZBTB43O43298 467 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 ADORA2AP29274 412 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 ANAPC15P60006 121 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 APOBRQ0VD83 1088 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 GRB14Q14449 540 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 TKFCQ3LXA3 575 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 USH1GQ495M9 461 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 HOMER1Q86YM7 354 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 ANKRD35Q8N283 1001 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 SLAIN1Q8ND83 568 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 CHST13Q8NET6 341 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 PIBF1Q8WXW3 757 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 BRF1Q92994 677 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 APBA2Q99767 749 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 TM6SF1Q9BZW5 370 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 ACAD9Q9H845 621 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 JMJD4Q9H9V9 463 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 PDRG1Q9NUG6 133 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 SLC5A4Q9NY91 659 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 PNMA2Q9UL42 364 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 BRPF3Q9ULD4 1205 aa13.32□□□□□ -0.28
CCDC88C-212ENST00000556767 PGK2P07205 417 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 GNAQP50148 359 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 UBXN2AP68543 259 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 QRICH1Q2TAL8 776 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 APOA5Q6Q788 366 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 FANCBQ8NB91 859 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 PXYLP1Q8TE99 480 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 MAP3K14Q99558 947 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 LZTS2Q9BRK4 669 aa13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 UPF2Q9HAU5 1272 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-212ENST00000556767 GOLGA8AA7E2F4 631 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 GOLGA8BA8MQT2 603 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 COBLO75128 1261 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 CAPN15O75808 1086 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 PLEKHA8P1O95397 391 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 XRCC5P13010 732 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 CCL14Q16627 93 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 RTN1Q16799 776 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 MUM1L1Q5H9M0 696 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 NSMFQ6X4W1 530 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 FBXO11Q86XK2 927 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 ABRAQ8N0Z2 381 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 CMTR1Q8N1G2 835 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 CCDC82Q8N4S0 544 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 NPLOC4Q8TAT6 608 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 USP6NLQ92738 828 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 PIGSQ96S52 555 aa13.3□□□□□ -0.28
CCDC88C-212ENST00000556767 ZBTB5O15062 677 aa13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 HMGCRP04035 888 aa13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 INHAP05111 366 aa13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 METAP2P50579 478 aaKnown RBP eCLIP13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 TRMT44Q8IYL2 757 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 TRIB2Q92519 343 aa13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 ARMC5Q96C12 935 aa13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 RRP36Q96EU6 259 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 LARP6Q9BRS8 491 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-212ENST00000556767 AMNQ9BXJ7 453 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms