RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 STOX1Q6ZVD7 989 aa24.08■■□□□ 1.45
VTI1B-205ENST00000555543 PNMA1Q8ND90 353 aa24.08■■□□□ 1.45
VTI1B-205ENST00000555543 CHST13Q8NET6 341 aa24.08■■□□□ 1.45
VTI1B-205ENST00000555543 LSG1Q9H089 658 aaKnown RBP24.08■■□□□ 1.45
VTI1B-205ENST00000555543 RBM8AQ9Y5S9 174 aaKnown RBP24.08■■□□□ 1.45
VTI1B-205ENST00000555543 DNAJC25-GNG10A0A024R161 153 aa24.07■■□□□ 1.44
VTI1B-205ENST00000555543 CAPN2P17655 700 aa24.07■■□□□ 1.44
VTI1B-205ENST00000555543 PAWRQ96IZ0 340 aaKnown RBP24.07■■□□□ 1.44
VTI1B-205ENST00000555543 RANBP17Q9H2T7 1088 aaKnown RBP24.07■■□□□ 1.44
VTI1B-205ENST00000555543 RNF146Q9NTX7 359 aa24.07■■□□□ 1.44
VTI1B-205ENST00000555543 FBXO40Q9UH90 709 aa24.07■■□□□ 1.44
VTI1B-205ENST00000555543 DIS3Q9Y2L1 958 aaKnown RBP24.07■■□□□ 1.44
VTI1B-205ENST00000555543 E7EWF7 191 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 GOLGA8HP0CJ92 632 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 CNGA1P29973 690 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 PRAMEF19Q5SWL8 479 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 ANKLE1Q8NAG6 615 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 DDX11Q96FC9 970 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 UBAC1Q9BSL1 405 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 KAT14Q9H8E8 782 aa24.06■■□□□ 1.44
VTI1B-205ENST00000555543 DDX20Q9UHI6 824 aaKnown RBP24.06■■□□□ 1.44
VTI1B-205ENST00000555543 ALAS1P13196 640 aa24.05■■□□□ 1.44
VTI1B-205ENST00000555543 SEC23AQ15436 765 aa24.05■■□□□ 1.44
VTI1B-205ENST00000555543 FGD4Q96M96 766 aa24.05■■□□□ 1.44
VTI1B-205ENST00000555543 TINF2Q9BSI4 451 aa24.05■■□□□ 1.44
VTI1B-205ENST00000555543 CPVLQ9H3G5 476 aa24.05■■□□□ 1.44
VTI1B-205ENST00000555543 ACAD9Q9H845 621 aa24.05■■□□□ 1.44
VTI1B-205ENST00000555543 ICAM1P05362 532 aa24.04■■□□□ 1.44
VTI1B-205ENST00000555543 MUM1L1Q5H9M0 696 aa24.04■■□□□ 1.44
VTI1B-205ENST00000555543 ANKRD35Q8N283 1001 aa24.04■■□□□ 1.44
VTI1B-205ENST00000555543 TRERF1Q96PN7 1200 aa24.04■■□□□ 1.44
VTI1B-205ENST00000555543 A1CFQ9NQ94 594 aaKnown RBP24.04■■□□□ 1.44
VTI1B-205ENST00000555543 CCPG1Q9ULG6 757 aa24.04■■□□□ 1.44
VTI1B-205ENST00000555543 SMCHD1A6NHR9 2005 aa24.04■■□□□ 1.44
VTI1B-205ENST00000555543 TRDNQ13061 729 aa24.03■■□□□ 1.44
VTI1B-205ENST00000555543 TKFCQ3LXA3 575 aa24.03■■□□□ 1.44
VTI1B-205ENST00000555543 GPATCH4Q5T3I0 446 aaKnown RBP24.03■■□□□ 1.44
VTI1B-205ENST00000555543 KIAA1211Q6ZU35 1233 aa24.03■■□□□ 1.44
VTI1B-205ENST00000555543 CEP290O15078 2479 aa24.03■■□□□ 1.44
VTI1B-205ENST00000555543 IFIT1BQ5T764 474 aaKnown RBP24.02■■□□□ 1.44
VTI1B-205ENST00000555543 ANO1Q5XXA6 986 aa24.02■■□□□ 1.44
VTI1B-205ENST00000555543 NECAB2Q7Z6G3 386 aa24.02■■□□□ 1.44
VTI1B-205ENST00000555543 HTATIP2Q9BUP3 242 aa24.02■■□□□ 1.44
VTI1B-205ENST00000555543 UBA5Q9GZZ9 404 aa24.02■■□□□ 1.44
VTI1B-205ENST00000555543 ANO2Q9NQ90 1003 aa24.02■■□□□ 1.44
VTI1B-205ENST00000555543 ALPK3Q96L96 1907 aa24.02■■□□□ 1.44
VTI1B-205ENST00000555543 SEPT4O43236 478 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 MSCO60682 206 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 ANTXR2P58335 489 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 CNTN2Q02246 1040 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 CHST3Q7LGC8 479 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 RALYLQ86SE5 291 aaKnown RBP24.01■■□□□ 1.43
VTI1B-205ENST00000555543 MB21D2Q8IYB1 491 aaPredicted RBP24.01■■□□□ 1.43
VTI1B-205ENST00000555543 NCOA7Q8NI08 942 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 SENP2Q9HC62 589 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 PFASO15067 1338 aa24.01■■□□□ 1.43
VTI1B-205ENST00000555543 CDC45O75419 566 aa24■■□□□ 1.43
VTI1B-205ENST00000555543 COL9A3Q14050 684 aaPredicted RBP24■■□□□ 1.43
VTI1B-205ENST00000555543 MAMDC4Q6UXC1 1216 aa24■■□□□ 1.43
VTI1B-205ENST00000555543 ZNF467Q7Z7K2 595 aaPredicted RBP24■■□□□ 1.43
VTI1B-205ENST00000555543 FAM133AQ8N9E0 248 aa24■■□□□ 1.43
VTI1B-205ENST00000555543 DPF3Q92784 378 aa24■■□□□ 1.43
VTI1B-205ENST00000555543 C11orf49Q9H6J7 331 aa24■■□□□ 1.43
VTI1B-205ENST00000555543 NRBP1Q9UHY1 535 aa24■■□□□ 1.43
VTI1B-205ENST00000555543 LCTP09848 1927 aa24■■□□□ 1.43
VTI1B-205ENST00000555543 SLC27A2O14975 620 aa23.99■■□□□ 1.43
VTI1B-205ENST00000555543 SNAI1O95863 264 aaPredicted RBP23.99■■□□□ 1.43
VTI1B-205ENST00000555543 ZNF865P0CJ78 1059 aaPredicted RBP23.99■■□□□ 1.43
VTI1B-205ENST00000555543 ASPRV1Q53RT3 343 aa23.99■■□□□ 1.43
VTI1B-205ENST00000555543 MSL3Q8N5Y2 521 aaKnown RBP23.99■■□□□ 1.43
VTI1B-205ENST00000555543 ASTN1O14525 1302 aa23.99■■□□□ 1.43
VTI1B-205ENST00000555543 SYNGAP1Q96PV0 1343 aa23.99■■□□□ 1.43
VTI1B-205ENST00000555543 MCM3APO60318 1980 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 DNAH12Q6ZR08 3092 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 POTEB2H3BUK9 544 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 NFIBO00712 420 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 IFIT3O14879 490 aaKnown RBP23.98■■□□□ 1.43
VTI1B-205ENST00000555543 COL6A1P12109 1028 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 NECTIN1Q15223 517 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 CREB3L3Q68CJ9 461 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 CYP39A1Q9NYL5 469 aa23.98■■□□□ 1.43
VTI1B-205ENST00000555543 SOWAHBA6NEL2 793 aa23.97■■□□□ 1.43
VTI1B-205ENST00000555543 H0YGN5 161 aa23.97■■□□□ 1.43
VTI1B-205ENST00000555543 PARP1P09874 1014 aaKnown RBP23.97■■□□□ 1.43
VTI1B-205ENST00000555543 NSMFQ6X4W1 530 aa23.97■■□□□ 1.43
VTI1B-205ENST00000555543 ADGRF4Q8IZF3 695 aa23.97■■□□□ 1.43
VTI1B-205ENST00000555543 STAG2Q8N3U4 1231 aa23.97■■□□□ 1.43
VTI1B-205ENST00000555543 WDR19Q8NEZ3 1342 aa23.97■■□□□ 1.43
VTI1B-205ENST00000555543 LENG1Q96BZ8 264 aaPredicted RBP23.97■■□□□ 1.43
VTI1B-205ENST00000555543 CNPY2Q9Y2B0 182 aa23.97■■□□□ 1.43
VTI1B-205ENST00000555543 ARMCX2Q7L311 632 aa23.96■■□□□ 1.43
VTI1B-205ENST00000555543 CLEC4DQ8WXI8 215 aa23.96■■□□□ 1.43
VTI1B-205ENST00000555543 PURBQ96QR8 312 aaKnown RBP23.96■■□□□ 1.43
VTI1B-205ENST00000555543 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.96■■□□□ 1.43
VTI1B-205ENST00000555543 DDX49Q9Y6V7 483 aaKnown RBP23.96■■□□□ 1.43
VTI1B-205ENST00000555543 LRRC37A2A6NM11 1700 aa23.96■■□□□ 1.43
VTI1B-205ENST00000555543 WTAPQ15007 396 aa23.95■■□□□ 1.42
VTI1B-205ENST00000555543 CDC37Q16543 378 aaPredicted RBP23.95■■□□□ 1.42
VTI1B-205ENST00000555543 TMEM67Q5HYA8 995 aa23.95■■□□□ 1.42
VTI1B-205ENST00000555543 CCDC144CPQ8IYA2 1237 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms