RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 RASIP1Q5U651 963 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 CCDC129Q6ZRS4 1044 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 SLC44A5Q8NCS7 719 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 CHMP4CQ96CF2 233 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 DNAJC2Q99543 621 aaKnown RBP13□□□□□ -0.33
SHMT2-216ENST00000554975 TBX21Q9UL17 535 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 RBM8AQ9Y5S9 174 aaKnown RBP13□□□□□ -0.33
SHMT2-216ENST00000554975 U3KPZ7 1027 aaPredicted RBP13□□□□□ -0.33
SHMT2-216ENST00000554975 SYNGAP1Q96PV0 1343 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 ADAMTS4O75173 837 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 TIMP1P01033 207 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 ACRP10323 421 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 RARBP10826 455 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 BMP1P13497 986 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 PDCP20941 246 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 CYP7A1P22680 504 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 IGFBP4P22692 258 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 SHMT1P34896 483 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 SEPT2Q15019 361 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 ABCB5Q2M3G0 1257 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 CERKLQ49MI3 558 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-216ENST00000554975 ANKRD33Q7Z3H0 272 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 SHCBP1Q8NEM2 672 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 MAP4K1Q92918 833 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 JAKMIP1Q96N16 626 aaKnown RBP12.99□□□□□ -0.33
SHMT2-216ENST00000554975 HAUS7Q99871 368 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 LRFN3Q9BTN0 628 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 ALDH8A1Q9H2A2 487 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-216ENST00000554975 EPHX3Q9H6B9 360 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 ZSWIM6Q9HCJ5 1215 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 PDRG1Q9NUG6 133 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 LMBRD1Q9NUN5 540 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 BRPF3Q9ULD4 1205 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 SMC3Q9UQE7 1217 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 LAMA4Q16363 1823 aa12.99□□□□□ -0.33
SHMT2-216ENST00000554975 BAZ2AQ9UIF9 1905 aaKnown RBP12.98□□□□□ -0.33
SHMT2-216ENST00000554975 CSF2RAP15509 400 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 PLCD1P51178 756 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 KCNQ1P51787 676 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 AK2P54819 239 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 PLS1Q14651 629 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 COG2Q14746 738 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 NECTIN1Q15223 517 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 TSGA10IPQ3SY00 556 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 CREB3L3Q68CJ9 461 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 BLOC1S2Q6QNY1 142 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 RUFY3Q7L099 469 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 NCAPG2Q86XI2 1143 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 MAGEB6Q8N7X4 407 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 MIGA1Q8NAN2 632 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 TMEM87AQ8NBN3 555 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 ATG4CQ96DT6 458 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 TANGO6Q9C0B7 1094 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 IL25Q9H293 177 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 NKX2-4Q9H2Z4 354 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 SERPINB13Q9UIV8 391 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 YBX2Q9Y2T7 364 aaKnown RBP12.98□□□□□ -0.33
SHMT2-216ENST00000554975 TCHHQ07283 1943 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 MYH15Q9Y2K3 1946 aa12.98□□□□□ -0.33
SHMT2-216ENST00000554975 ROBO3Q96MS0 1386 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 MYADML2A6NDP7 307 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 GOLIM4O00461 696 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 PGK2P07205 417 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 ZNF865P0CJ78 1059 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-216ENST00000554975 XRCC6P12956 609 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHMT2-216ENST00000554975 ACLYP53396 1101 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 CCDC173Q0VFZ6 552 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 TTF1Q15361 905 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-216ENST00000554975 MFSD5Q6N075 450 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 ZNF365Q70YC5 407 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 RNF180Q86T96 592 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 KBTBD3Q8NAB2 608 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 TOX2Q96NM4 488 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 C1QTNF1Q9BXJ1 281 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 EHD4Q9H223 541 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 BOLA2Q9H3K6 86 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 STARD7Q9NQZ5 370 aa12.97□□□□□ -0.33
SHMT2-216ENST00000554975 CXXC1Q9P0U4 656 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-216ENST00000554975 SYNRGQ9UMZ2 1314 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 DCDC2CA8MYV0 355 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 HMGB1P09429 215 aaKnown RBP12.96□□□□□ -0.33
SHMT2-216ENST00000554975 DSG3P32926 999 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 CLEC10AQ8IUN9 316 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 ABRAQ8N0Z2 381 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 KLHDC9Q8NEP7 349 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 KHSRPQ92945 711 aaKnown RBP eCLIP12.96□□□□□ -0.33
SHMT2-216ENST00000554975 PPP1R12CQ9BZL4 782 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 MROH8Q9H579 483 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 KIF3AQ9Y496 699 aa12.96□□□□□ -0.33
SHMT2-216ENST00000554975 SCN5AQ14524 2016 aa12.96□□□□□ -0.34
SHMT2-216ENST00000554975 A0A0D9SFI3 127 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 SLC27A2O14975 620 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 ZFYP08048 801 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-216ENST00000554975 USP5P45974 858 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 PPIGQ13427 754 aaKnown RBP eCLIP12.95□□□□□ -0.343e-10■□□□□ 10.6
SHMT2-216ENST00000554975 TMEM132BQ14DG7 1078 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 KCNA10Q16322 511 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 ZNF792Q3KQV3 632 aa12.95□□□□□ -0.34
SHMT2-216ENST00000554975 CCSAPQ6IQ19 270 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-216ENST00000554975 SAMD1Q6SPF0 538 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms