RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ADGRF4Q8IZF3 695 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 ZNF713Q8N859 430 aaPredicted RBP16.33■□□□□ 0.2
VPS33A-209ENST00000544349 CACTINQ8WUQ7 758 aaKnown RBP16.33■□□□□ 0.2
VPS33A-209ENST00000544349 CLIC6Q96NY7 704 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 JMJD4Q9H9V9 463 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 FAM13BQ9NYF5 915 aa16.33■□□□□ 0.2
VPS33A-209ENST00000544349 WNT7AO00755 349 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 DYNC1I1O14576 645 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 PTPREP23469 700 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 MAP3K10Q02779 954 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 ARHGAP27Q6ZUM4 889 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 SAMD7Q7Z3H4 446 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 CEP57L1Q8IYX8 460 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 GMCL1P1Q8NEA9 526 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 SDF4Q9BRK5 362 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 FBXO2Q9UK22 296 aaPredicted RBP16.32■□□□□ 0.2
VPS33A-209ENST00000544349 PCDHA6Q9UN73 950 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 PCDHA8Q9Y5H6 950 aa16.32■□□□□ 0.2
VPS33A-209ENST00000544349 DICER1Q9UPY3 1922 aaKnown RBP16.32■□□□□ 0.2
VPS33A-209ENST00000544349 FAM237AA0A1B0GTK4 181 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 F5H6K3 240 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 SLC1A4P43007 532 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 KLRC3Q07444 240 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 RASA3Q14644 834 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 TTC38Q5R3I4 469 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 RESP18Q5W5W9 173 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 MIGA2Q7L4E1 593 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 HPSEQ9Y251 543 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 SRPRBQ9Y5M8 271 aaKnown RBP16.31■□□□□ 0.2
VPS33A-209ENST00000544349 PNMA6FA0A0J9YX94 578 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 SMCO2A6NFE2 343 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 RAD21O60216 631 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 BMP15O95972 392 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 TNFAIP1Q13829 316 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 RASGRP4Q8TDF6 673 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 MTMR8Q96EF0 704 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 MRFAP1L1Q96HT8 127 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 C6orf50Q9HD87 102 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 SYNPO2Q9UMS6 1093 aa16.31■□□□□ 0.2
VPS33A-209ENST00000544349 ESYT2A0FGR8 921 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 BECN2A8MW95 431 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 BIN1O00499 593 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 ZNF202O95125 648 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 LMNB1P20700 586 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 GNA11P29992 359 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 SLC16A2P36021 539 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 ZNF174Q15697 407 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 TBC1D10BQ4KMP7 808 aaPredicted RBP16.3■□□□□ 0.2
VPS33A-209ENST00000544349 PRIMPOLQ96LW4 560 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 KIAA1468Q9P260 1216 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 ZBTB21Q9ULJ3 1066 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 SCAF8Q9UPN6 1271 aaKnown RBP16.3■□□□□ 0.2
VPS33A-209ENST00000544349 CCDC194A0A1B0GVG4 234 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 A0A1W2PRG0 241 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 GRIN1Q05586 938 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 KIF4BQ2VIQ3 1234 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 ZNF579Q8NAF0 562 aaKnown RBP16.3■□□□□ 0.2
VPS33A-209ENST00000544349 GMCL1Q96IK5 515 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 SBF1O95248 1867 aa16.3■□□□□ 0.2
VPS33A-209ENST00000544349 USP17L10C9JJH3 530 aa16.29■□□□□ 0.2
VPS33A-209ENST00000544349 NDUFB10O96000 172 aa16.29■□□□□ 0.2
VPS33A-209ENST00000544349 COA7Q96BR5 231 aa16.29■□□□□ 0.2
VPS33A-209ENST00000544349 TEPSINQ96N21 525 aa16.29■□□□□ 0.2
VPS33A-209ENST00000544349 ARHGEF10LQ9HCE6 1279 aa16.29■□□□□ 0.2
VPS33A-209ENST00000544349 ZBTB5O15062 677 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 CAP2P40123 477 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 SYKP43405 635 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 HACL1Q9UJ83 578 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 ASTN2O75129 1339 aaPredicted RBP16.28■□□□□ 0.2
VPS33A-209ENST00000544349 H7C1D1 291 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 ATP2C1P98194 919 aaPredicted RBP16.28■□□□□ 0.2
VPS33A-209ENST00000544349 TIGD1Q96MW7 591 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 SYT17Q9BSW7 474 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 TMX2Q9Y320 296 aa16.28■□□□□ 0.2
VPS33A-209ENST00000544349 PPP1R11O60927 126 aaPredicted RBP16.27■□□□□ 0.2
VPS33A-209ENST00000544349 ECE1P42892 770 aa16.27■□□□□ 0.2
VPS33A-209ENST00000544349 PTGDRQ13258 359 aa16.27■□□□□ 0.2
VPS33A-209ENST00000544349 SPECC1Q5M775 1068 aa16.27■□□□□ 0.2
VPS33A-209ENST00000544349 PPP1R18Q6NYC8 613 aa16.27■□□□□ 0.2
VPS33A-209ENST00000544349 KRT25Q7Z3Z0 450 aa16.27■□□□□ 0.2
VPS33A-209ENST00000544349 ACER1Q8TDN7 264 aa16.27■□□□□ 0.2
VPS33A-209ENST00000544349 BMP3P12645 472 aa16.27■□□□□ 0.19
VPS33A-209ENST00000544349 MCM7P33993 719 aa16.27■□□□□ 0.19
VPS33A-209ENST00000544349 GTF2F1P35269 517 aaKnown RBP eCLIP16.27■□□□□ 0.19
VPS33A-209ENST00000544349 GPC2Q8N158 579 aa16.27■□□□□ 0.19
VPS33A-209ENST00000544349 FERMT2Q96AC1 680 aa16.27■□□□□ 0.19
VPS33A-209ENST00000544349 C16orf45Q96MC5 204 aaPredicted RBP16.27■□□□□ 0.19
VPS33A-209ENST00000544349 NUP88Q99567 741 aaPredicted RBP16.27■□□□□ 0.19
VPS33A-209ENST00000544349 CSRNP2Q9H175 543 aa16.27■□□□□ 0.19
VPS33A-209ENST00000544349 KCNH3Q9ULD8 1083 aa16.27■□□□□ 0.19
VPS33A-209ENST00000544349 INF2Q27J81 1249 aa16.26■□□□□ 0.19
VPS33A-209ENST00000544349 ISM2Q6H9L7 571 aa16.26■□□□□ 0.19
VPS33A-209ENST00000544349 LRRC8AQ8IWT6 810 aa16.26■□□□□ 0.19
VPS33A-209ENST00000544349 ZNF710Q8N1W2 664 aa16.26■□□□□ 0.19
VPS33A-209ENST00000544349 GPRC5DQ9NZD1 345 aa16.26■□□□□ 0.19
VPS33A-209ENST00000544349 PHF20L1A8MW92 1017 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 RIOK3O14730 519 aaKnown RBP16.25■□□□□ 0.19
VPS33A-209ENST00000544349 NLRP12P59046 1061 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 NCAPHQ15003 741 aa16.25■□□□□ 0.19
VPS33A-209ENST00000544349 QRICH1Q2TAL8 776 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms