RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 SLC1A4P43007 532 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 SLC4A3P48751 1232 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 STAT2P52630 851 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 SNAP25P60880 206 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 CNTN2Q02246 1040 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 TRIM60Q495X7 471 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 TTBK2Q6IQ55 1244 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 SH3RF1Q7Z6J0 888 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 FAM160B2Q86V87 743 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 CHURC1Q8WUH1 139 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 PRR12Q9ULL5 1215 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 STX8Q9UNK0 236 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 COL6A3P12111 3177 aa13.99□□□□□ -0.17
CLSTN3-211ENST00000541667 LAMA2P24043 3122 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 ZMYM6O95789 1325 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 TRIM43BA6NCK2 446 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 MYADML2A6NDP7 307 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 CTAGE5O15320 804 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 AKR1A1P14550 325 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 ITGB8P26012 769 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 ACVR2BQ13705 512 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 GPR153Q6NV75 609 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 BTNL9Q6UXG8 535 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 ANKRD35Q8N283 1001 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 TRIM43Q96BQ3 446 aaPredicted RBP13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 TMEM47Q9BQJ4 181 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 A1CFQ9NQ94 594 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 FBXO40Q9UH90 709 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 ATP11BQ9Y2G3 1177 aa13.98□□□□□ -0.17
CLSTN3-211ENST00000541667 CCDC171Q6TFL3 1326 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 MCM3APO60318 1980 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 TRIM6-TRIM34B2RNG4 842 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 MYCNP04198 464 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 HAND2P61296 217 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 NKX3-2P78367 333 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 TLE2Q04725 743 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 MUM1L1Q5H9M0 696 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 PPP4R3BQ5MIZ7 849 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 RNF180Q86T96 592 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 TBC1D10CQ8IV04 446 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 CCDC144CPQ8IYA2 1237 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 RILPL2Q969X0 211 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 TRERF1Q96PN7 1200 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 ABHD16BQ9H3Z7 469 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 PDLIM7Q9NR12 457 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 HOMER2Q9NSB8 354 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 FAM184BQ9ULE4 1060 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 CNPY2Q9Y2B0 182 aa13.97□□□□□ -0.17
CLSTN3-211ENST00000541667 SYNRGQ9UMZ2 1314 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 A0A1W2PQ45 241 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 A0A1W2PQY0 241 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 DUSP11O75319 330 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 SLC16A2P36021 539 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 KCNA10Q16322 511 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 TKFCQ3LXA3 575 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 CCDC144BQ3MJ40 725 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 AKNAD1Q5T1N1 836 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 ARMCX2Q7L311 632 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 DCAF4Q8WV16 495 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 PURBQ96QR8 312 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 TSEN34Q9BSV6 310 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 UPF3AQ9H1J1 476 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 RANBP17Q9H2T7 1088 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 ACAD9Q9H845 621 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 RNF146Q9NTX7 359 aa13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 DDX49Q9Y6V7 483 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-211ENST00000541667 LTBP2Q14767 1821 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 POTEB2H3BUK9 544 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 SNHG28P0DPA3 235 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 TOP1P11387 765 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 PDE4AP27815 886 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 CDK7P50613 346 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 ACLYP53396 1101 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 RRP12Q5JTH9 1297 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 TMEM63BQ5T3F8 832 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 CCDC174Q6PII3 467 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 BADQ92934 168 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 TTC14Q96N46 770 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 IL25Q9H293 177 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 CYP39A1Q9NYL5 469 aa13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 ZHX1Q9UKY1 873 aaPredicted RBP13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 CTDP1Q9Y5B0 961 aaPredicted RBP13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 SUPT16HQ9Y5B9 1047 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-211ENST00000541667 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 ICAM1P05362 532 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 PDHBP11177 359 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 ALAS1P13196 640 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 PTGS1P23219 599 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 CST5P28325 142 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 GJA9P57773 515 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 SHHQ15465 462 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 C9orf50Q5SZB4 431 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 CWC27Q6UX04 472 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 Q7L0L9 218 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 ANKRD33Q7Z3H0 272 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 MORC4Q8TE76 937 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 MTMR10Q9NXD2 777 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 MTMR7Q9Y216 660 aa13.94□□□□□ -0.18
CLSTN3-211ENST00000541667 GNEQ9Y223 722 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms