RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 REXO1Q8N1G1 1221 aaKnown RBP16.5■□□□□ 0.23
CLIP1-216ENST00000541410 UIMC1Q96RL1 719 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 BPIFA3Q9BQP9 254 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 XPO4Q9C0E2 1151 aaKnown RBP16.5■□□□□ 0.23
CLIP1-216ENST00000541410 TAL1P17542 331 aaPredicted RBP16.49■□□□□ 0.23
CLIP1-216ENST00000541410 SARSP49591 514 aaKnown RBP16.49■□□□□ 0.23
CLIP1-216ENST00000541410 GALNT17Q6IS24 598 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 TATDN1Q6P1N9 297 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 SPICE1Q8N0Z3 855 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 OGFOD1Q8N543 542 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 PSME4Q14997 1843 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 COBLO75128 1261 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 VIL1P09327 827 aaKnown RBP16.49■□□□□ 0.23
CLIP1-216ENST00000541410 SMARCA1P28370 1054 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 FMR1Q06787 632 aaKnown RBP eCLIP16.49■□□□□ 0.234e-6■■■■□ 21.6
CLIP1-216ENST00000541410 SLFN13Q68D06 897 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 DTHD1Q6ZMT9 781 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 MIGA2Q7L4E1 593 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 RASSF8Q8NHQ8 419 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 KANSL2Q9H9L4 492 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 FANCLQ9NW38 375 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 PIM2Q9P1W9 311 aa16.49■□□□□ 0.23
CLIP1-216ENST00000541410 SMCHD1A6NHR9 2005 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 KLHL10Q6JEL2 608 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 KRT25Q7Z3Z0 450 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 NIM1KQ8IY84 436 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 SLC16A10Q8TF71 515 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 GMLQ99445 158 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 MTRQ99707 1265 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 ZNF70Q9UC06 446 aaPredicted RBP16.48■□□□□ 0.23
CLIP1-216ENST00000541410 PNMA6FA0A0J9YX94 578 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 SMTNL1A8MU46 457 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 ADCY7P51828 1080 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 MORC3Q14149 939 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 E2F4Q16254 413 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 NEK8Q86SG6 692 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 CACTINQ8WUQ7 758 aaKnown RBP16.48■□□□□ 0.23
CLIP1-216ENST00000541410 MRFAP1L1Q96HT8 127 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 TMEM39BQ9GZU3 492 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.48■□□□□ 0.23
CLIP1-216ENST00000541410 TMOD2Q9NZR1 351 aa16.48■□□□□ 0.23
CLIP1-216ENST00000541410 ENTPD3O75355 529 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 TNNI2P48788 182 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 MYL5Q02045 173 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 CXCL9Q07325 125 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 NT5DC1Q5TFE4 455 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 ARL6IP4Q66PJ3 421 aaKnown RBP16.47■□□□□ 0.23
CLIP1-216ENST00000541410 KANK3Q6NY19 840 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.47■□□□□ 0.23
CLIP1-216ENST00000541410 POTEDQ86YR6 584 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 DPF2Q92785 391 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 NAP1L5Q96NT1 182 aaPredicted RBP16.47■□□□□ 0.23
CLIP1-216ENST00000541410 ZNRF3Q9ULT6 936 aa16.47■□□□□ 0.23
CLIP1-216ENST00000541410 MORC2Q9Y6X9 1032 aaPredicted RBP16.47■□□□□ 0.23
CLIP1-216ENST00000541410 A0A1W2PRG0 241 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 F5H6K3 240 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 ECE1P42892 770 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 STX17P56962 302 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 KLRC3Q07444 240 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 IKQ13123 557 aaPredicted RBP16.46■□□□□ 0.23
CLIP1-216ENST00000541410 CUL4BQ13620 913 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 GPATCH4Q5T3I0 446 aaKnown RBP16.46■□□□□ 0.23
CLIP1-216ENST00000541410 RBM26Q5T8P6 1007 aaKnown RBP16.46■□□□□ 0.23
CLIP1-216ENST00000541410 TMEM179Q6ZVK1 233 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 SH3RF1Q7Z6J0 888 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 IQUBQ8NA54 791 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 GJA10Q969M2 543 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 ZBTB5O15062 677 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 TDP2O95551 362 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 TECP42680 631 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 FANCCQ00597 558 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 DPYDQ12882 1025 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 R3HDM1Q15032 1099 aaKnown RBP16.46■□□□□ 0.23
CLIP1-216ENST00000541410 NBPF9Q3BBW0 867 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 PDXDC2PQ6P474 469 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 MED15Q96RN5 788 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 NYAP2Q9P242 653 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 HDAC9Q9UKV0 1011 aa16.46■□□□□ 0.23
CLIP1-216ENST00000541410 MYH7BA7E2Y1 1941 aa16.46■□□□□ 0.22
CLIP1-216ENST00000541410 IKBKBO14920 756 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 NEMFO60524 1076 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 CD44P16070 742 aaKnown RBP16.45■□□□□ 0.22
CLIP1-216ENST00000541410 LONP1P36776 959 aaKnown RBP16.45■□□□□ 0.22
CLIP1-216ENST00000541410 STAT6P42226 847 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 TPM4P67936 248 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 QRICH1Q2TAL8 776 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 SAMD1Q6SPF0 538 aaPredicted RBP16.45■□□□□ 0.22
CLIP1-216ENST00000541410 CCDC84Q86UT8 332 aaPredicted RBP16.45■□□□□ 0.22
CLIP1-216ENST00000541410 ELOA2Q8IYF1 753 aaPredicted RBP16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L15C9J2P7 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L13C9JLJ4 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L11C9JVI0 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L18D6R9N7 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L22D6RA61 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L17D6RBQ6 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L19D6RCP7 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L20D6RJB6 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 SLC37A4O43826 429 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 EDIL3O43854 480 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 NDUFB10O96000 172 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms