RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 MTA3Q9BTC8 594 aa18.4■□□□□ 0.54
RPAIN-206ENST00000539417 MROH8Q9H579 483 aa18.4■□□□□ 0.54
RPAIN-206ENST00000539417 BRPF3Q9ULD4 1205 aa18.4■□□□□ 0.54
RPAIN-206ENST00000539417 CTDP1Q9Y5B0 961 aaPredicted RBP18.4■□□□□ 0.54
RPAIN-206ENST00000539417 ZNFX1Q9P2E3 1918 aaKnown RBP18.4■□□□□ 0.54
RPAIN-206ENST00000539417 ZNF236Q9UL36 1845 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 KLRF2D3W0D1 207 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 PGK2P07205 417 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 LIFRP42702 1097 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 OAZ1P54368 228 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 MTFR1Q15390 333 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 MUM1L1Q5H9M0 696 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 CCDC144CPQ8IYA2 1237 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 NUP133Q8WUM0 1156 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 ZNF333Q96JL9 665 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 VAT1LQ9HCJ6 419 aa18.39■□□□□ 0.54
RPAIN-206ENST00000539417 CYTH3O43739 400 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 ALAS1P13196 640 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 CASTP20810 708 aaKnown RBP18.39■□□□□ 0.53
RPAIN-206ENST00000539417 NFXL1Q6ZNB6 911 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 CATIPQ7Z7H3 387 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 SOCS4Q8WXH5 440 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 MMP19Q99542 508 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 JMJD4Q9H9V9 463 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 IVNS1ABPQ9Y6Y0 642 aa18.39■□□□□ 0.53
RPAIN-206ENST00000539417 WDR19Q8NEZ3 1342 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 FDX1P10109 184 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 RPS6KB1P23443 525 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 RGS2P41220 211 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 BLOC1S2Q6QNY1 142 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 Q6ZUG5 572 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 CMTR1Q8N1G2 835 aaKnown RBP18.38■□□□□ 0.53
RPAIN-206ENST00000539417 SLAIN1Q8ND83 568 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 RNF146Q9NTX7 359 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 CCPG1Q9ULG6 757 aa18.38■□□□□ 0.53
RPAIN-206ENST00000539417 CCDC69A6NI79 296 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 STRNO43815 780 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 INHAP05111 366 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 ICAM1P05362 532 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 FCER1AP12319 257 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 CDC37Q16543 378 aaPredicted RBP18.37■□□□□ 0.53
RPAIN-206ENST00000539417 SGMS1Q86VZ5 419 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 PXYLP1Q8TE99 480 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 APBA2Q99767 749 aa18.37■□□□□ 0.53
RPAIN-206ENST00000539417 UPF3BQ9BZI7 483 aaKnown RBP18.37■□□□□ 0.53
RPAIN-206ENST00000539417 PPP1R11O60927 126 aaPredicted RBP18.36■□□□□ 0.53
RPAIN-206ENST00000539417 DDAH1O94760 285 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 PLEKHA8P1O95397 391 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 HOXC6P09630 235 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 XRCC5P13010 732 aaKnown RBP18.36■□□□□ 0.53
RPAIN-206ENST00000539417 SOX10P56693 466 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 APOBRQ0VD83 1088 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 QRICH1Q2TAL8 776 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 DPP9Q86TI2 863 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 ABRAQ8N0Z2 381 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 TRERF1Q96PN7 1200 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 ZSWIM6Q9HCJ5 1215 aa18.36■□□□□ 0.53
RPAIN-206ENST00000539417 BAZ2BQ9UIF8 2168 aaKnown RBP18.35■□□□□ 0.53
RPAIN-206ENST00000539417 NFIBO00712 420 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 IGHA2P01877 340 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 HMGB1P09429 215 aaKnown RBP18.35■□□□□ 0.53
RPAIN-206ENST00000539417 APOA5Q6Q788 366 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 MICU3Q86XE3 530 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 TMTC2Q8N394 836 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 CLEC4DQ8WXI8 215 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 PIBF1Q8WXW3 757 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 BRF1Q92994 677 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 MTMR8Q96EF0 704 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 FGD4Q96M96 766 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 PURBQ96QR8 312 aaKnown RBP18.35■□□□□ 0.53
RPAIN-206ENST00000539417 LARP6Q9BRS8 491 aaKnown RBP18.35■□□□□ 0.53
RPAIN-206ENST00000539417 UNC93B1Q9H1C4 597 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 A1CFQ9NQ94 594 aaKnown RBP18.35■□□□□ 0.53
RPAIN-206ENST00000539417 BIN2Q9UBW5 565 aaPredicted RBP18.35■□□□□ 0.53
RPAIN-206ENST00000539417 SLC12A7Q9Y666 1083 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 PLXNA1Q9UIW2 1896 aa18.35■□□□□ 0.53
RPAIN-206ENST00000539417 DNAJC25-GNG10A0A024R161 153 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 KLF18A0A0U1RQI7 1052 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 POTEFA5A3E0 1075 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 DHX16O60231 1041 aaKnown RBP18.34■□□□□ 0.53
RPAIN-206ENST00000539417 COPB2P35606 906 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 KCTD2Q14681 263 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 ZNF792Q3KQV3 632 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 USH1GQ495M9 461 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 RUFY3Q7L099 469 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.34■□□□□ 0.53
RPAIN-206ENST00000539417 SRBD1Q8N5C6 995 aaKnown RBP18.34■□□□□ 0.53
RPAIN-206ENST00000539417 CHST13Q8NET6 341 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 PIGSQ96S52 555 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 RIOX1Q9H6W3 641 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 ACAD9Q9H845 621 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 DDX49Q9Y6V7 483 aaKnown RBP18.34■□□□□ 0.53
RPAIN-206ENST00000539417 LCTP09848 1927 aa18.34■□□□□ 0.53
RPAIN-206ENST00000539417 HMGCRP04035 888 aa18.33■□□□□ 0.53
RPAIN-206ENST00000539417 CYP2C19P33261 490 aa18.33■□□□□ 0.53
RPAIN-206ENST00000539417 CNTN2Q02246 1040 aa18.33■□□□□ 0.53
RPAIN-206ENST00000539417 TOB2Q14106 344 aaPredicted RBP18.33■□□□□ 0.53
RPAIN-206ENST00000539417 HOMER1Q86YM7 354 aa18.33■□□□□ 0.53
RPAIN-206ENST00000539417 TBC1D5Q92609 795 aa18.33■□□□□ 0.53
RPAIN-206ENST00000539417 MAML3Q96JK9 1138 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms