RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 CCND3P30281 292 aaPredicted RBP16.93■□□□□ 0.3
FOXR1-202ENST00000531539 WTAPQ15007 396 aa16.93■□□□□ 0.3
FOXR1-202ENST00000531539 SART3Q15020 963 aaKnown RBP16.93■□□□□ 0.3
FOXR1-202ENST00000531539 GPATCH4Q5T3I0 446 aaKnown RBP16.93■□□□□ 0.3
FOXR1-202ENST00000531539 MAP3K21Q5TCX8 1036 aa16.93■□□□□ 0.3
FOXR1-202ENST00000531539 CPVLQ9H3G5 476 aa16.93■□□□□ 0.3
FOXR1-202ENST00000531539 VAT1LQ9HCJ6 419 aa16.93■□□□□ 0.3
FOXR1-202ENST00000531539 PAK6Q9NQU5 681 aaPredicted RBP16.93■□□□□ 0.3
FOXR1-202ENST00000531539 COL11A1P12107 1806 aaPredicted RBP16.93■□□□□ 0.3
FOXR1-202ENST00000531539 PARP14Q460N5 1801 aa16.93■□□□□ 0.3
FOXR1-202ENST00000531539 PARP1P09874 1014 aaKnown RBP16.92■□□□□ 0.3
FOXR1-202ENST00000531539 ANTXR2P58335 489 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 ZNF792Q3KQV3 632 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 TKFCQ3LXA3 575 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 TMEM67Q5HYA8 995 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 PRAMEF19Q5SWL8 479 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 RNF20Q5VTR2 975 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 OLFML2BQ68BL8 750 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 MB21D2Q8IYB1 491 aaPredicted RBP16.92■□□□□ 0.3
FOXR1-202ENST00000531539 IGDCC4Q8TDY8 1250 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 MAML3Q96JK9 1138 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 RANBP17Q9H2T7 1088 aaKnown RBP16.92■□□□□ 0.3
FOXR1-202ENST00000531539 SENP2Q9HC62 589 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 RNF146Q9NTX7 359 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 CCPG1Q9ULG6 757 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 A0A0G2JMZ2 1700 aa16.92■□□□□ 0.3
FOXR1-202ENST00000531539 LAMA4Q16363 1823 aa16.91■□□□□ 0.3
FOXR1-202ENST00000531539 PRC1O43663 620 aa16.91■□□□□ 0.3
FOXR1-202ENST00000531539 DHX16O60231 1041 aaKnown RBP16.91■□□□□ 0.3
FOXR1-202ENST00000531539 ICAM1P05362 532 aa16.91■□□□□ 0.3
FOXR1-202ENST00000531539 SHISA4Q96DD7 197 aa16.91■□□□□ 0.3
FOXR1-202ENST00000531539 ACAD9Q9H845 621 aa16.91■□□□□ 0.3
FOXR1-202ENST00000531539 DIS3Q9Y2L1 958 aaKnown RBP16.91■□□□□ 0.3
FOXR1-202ENST00000531539 TAL1P17542 331 aaPredicted RBP16.9■□□□□ 0.3
FOXR1-202ENST00000531539 MCM5P33992 734 aa16.9■□□□□ 0.3
FOXR1-202ENST00000531539 ASPRV1Q53RT3 343 aa16.9■□□□□ 0.3
FOXR1-202ENST00000531539 MUM1L1Q5H9M0 696 aa16.9■□□□□ 0.3
FOXR1-202ENST00000531539 ADGRF4Q8IZF3 695 aa16.9■□□□□ 0.3
FOXR1-202ENST00000531539 STAG2Q8N3U4 1231 aa16.9■□□□□ 0.3
FOXR1-202ENST00000531539 TRPV1Q8NER1 839 aa16.9■□□□□ 0.3
FOXR1-202ENST00000531539 GPHNQ9NQX3 736 aaPredicted RBP16.9■□□□□ 0.3
FOXR1-202ENST00000531539 KLRF2D3W0D1 207 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 IGHA2P01877 340 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 CNTN2Q02246 1040 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 NSMFQ6X4W1 530 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 NFXL1Q6ZNB6 911 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 RASEFQ8IZ41 740 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 TINF2Q9BSI4 451 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 CRISPLD2Q9H0B8 497 aa16.89■□□□□ 0.29
FOXR1-202ENST00000531539 ZNFX1Q9P2E3 1918 aaKnown RBP16.89■□□□□ 0.29
FOXR1-202ENST00000531539 DNAJC25-GNG10A0A024R161 153 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 POTEB2H3BUK9 544 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 CAPN2P17655 700 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 COL9A3Q14050 684 aaPredicted RBP16.88■□□□□ 0.29
FOXR1-202ENST00000531539 LHX8Q68G74 356 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 CATIPQ7Z7H3 387 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 NUP133Q8WUM0 1156 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 NEK1Q96PY6 1258 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 LRRC2Q9BYS8 371 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 A1CFQ9NQ94 594 aaKnown RBP16.88■□□□□ 0.29
FOXR1-202ENST00000531539 MAD2L2Q9UI95 211 aa16.88■□□□□ 0.29
FOXR1-202ENST00000531539 FARP2O94887 1054 aaPredicted RBP16.87■□□□□ 0.29
FOXR1-202ENST00000531539 CYBAP13498 195 aa16.87■□□□□ 0.29
FOXR1-202ENST00000531539 USH1GQ495M9 461 aa16.87■□□□□ 0.29
FOXR1-202ENST00000531539 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.87■□□□□ 0.29
FOXR1-202ENST00000531539 TMTC2Q8N394 836 aa16.87■□□□□ 0.29
FOXR1-202ENST00000531539 TMEM87BQ96K49 555 aa16.87■□□□□ 0.29
FOXR1-202ENST00000531539 JMJD4Q9H9V9 463 aa16.87■□□□□ 0.29
FOXR1-202ENST00000531539 LY9Q9HBG7 655 aa16.87■□□□□ 0.29
FOXR1-202ENST00000531539 PNMA2Q9UL42 364 aa16.87■□□□□ 0.29
FOXR1-202ENST00000531539 PALM3A6NDB9 673 aaPredicted RBP16.86■□□□□ 0.29
FOXR1-202ENST00000531539 CCDC69A6NI79 296 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 REC8O95072 547 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 BAATQ14032 418 aaPredicted RBP16.86■□□□□ 0.29
FOXR1-202ENST00000531539 GRM4Q14833 912 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 CDC37Q16543 378 aaPredicted RBP16.86■□□□□ 0.29
FOXR1-202ENST00000531539 ADCK5Q3MIX3 580 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 TSGA10IPQ3SY00 556 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 ANO1Q5XXA6 986 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 PAWRQ96IZ0 340 aaKnown RBP16.86■□□□□ 0.29
FOXR1-202ENST00000531539 MTA3Q9BTC8 594 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 CYP39A1Q9NYL5 469 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 DDX20Q9UHI6 824 aaKnown RBP16.86■□□□□ 0.29
FOXR1-202ENST00000531539 OGDHLQ9ULD0 1010 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 CNPY2Q9Y2B0 182 aa16.86■□□□□ 0.29
FOXR1-202ENST00000531539 CENPFP49454 3210 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 PTPDC1A2A3K4 754 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 SOWAHBA6NEL2 793 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 SH2B2O14492 632 aaPredicted RBP16.85■□□□□ 0.29
FOXR1-202ENST00000531539 SNAI1O95863 264 aaPredicted RBP16.85■□□□□ 0.29
FOXR1-202ENST00000531539 TROAPQ12815 778 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 KRT32Q14532 448 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 QRICH1Q2TAL8 776 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 DPF3Q92784 378 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 MYL10Q9BUA6 226 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 PFASO15067 1338 aa16.85■□□□□ 0.29
FOXR1-202ENST00000531539 NFIBO00712 420 aa16.84■□□□□ 0.29
FOXR1-202ENST00000531539 SEPT4O43236 478 aa16.84■□□□□ 0.29
FOXR1-202ENST00000531539 MSCO60682 206 aa16.84■□□□□ 0.29
FOXR1-202ENST00000531539 MYCNP04198 464 aaPredicted RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms