RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TRDNQ13061 729 aa24.54■■□□□ 1.52
VPS28-203ENST00000524521 SYDE2Q5VT97 1194 aa24.54■■□□□ 1.52
VPS28-203ENST00000524521 TRERF1Q96PN7 1200 aa24.54■■□□□ 1.52
VPS28-203ENST00000524521 RNF146Q9NTX7 359 aa24.54■■□□□ 1.52
VPS28-203ENST00000524521 DNAJC25-GNG10A0A024R161 153 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 CYP21A2P08686 494 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 ZNF543Q08ER8 600 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 TKFCQ3LXA3 575 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 KIAA1211Q6ZU35 1233 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.53■■□□□ 1.52
VPS28-203ENST00000524521 ENAHQ8N8S7 591 aaPredicted RBP24.53■■□□□ 1.52
VPS28-203ENST00000524521 PNMA1Q8ND90 353 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 ANKS1AQ92625 1134 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 UBAC1Q9BSL1 405 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 C11orf49Q9H6J7 331 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 ACAD9Q9H845 621 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 PLXNA1Q9UIW2 1896 aa24.53■■□□□ 1.52
VPS28-203ENST00000524521 MKI67P46013 3256 aaKnown RBP24.52■■□□□ 1.52
VPS28-203ENST00000524521 SEPT4O43236 478 aa24.52■■□□□ 1.52
VPS28-203ENST00000524521 SNHG28P0DPA3 235 aa24.52■■□□□ 1.52
VPS28-203ENST00000524521 ANO1Q5XXA6 986 aa24.52■■□□□ 1.52
VPS28-203ENST00000524521 MAP4K1Q92918 833 aa24.52■■□□□ 1.52
VPS28-203ENST00000524521 CCPG1Q9ULG6 757 aa24.52■■□□□ 1.52
VPS28-203ENST00000524521 TNKSO95271 1327 aa24.52■■□□□ 1.52
VPS28-203ENST00000524521 H0YGN5 161 aa24.51■■□□□ 1.51
VPS28-203ENST00000524521 NEFLP07196 543 aa24.51■■□□□ 1.51
VPS28-203ENST00000524521 GOLGA8HP0CJ92 632 aa24.51■■□□□ 1.51
VPS28-203ENST00000524521 RANBP17Q9H2T7 1088 aaKnown RBP24.51■■□□□ 1.51
VPS28-203ENST00000524521 EVI5O60447 810 aa24.5■■□□□ 1.51
VPS28-203ENST00000524521 ICAM1P05362 532 aa24.5■■□□□ 1.51
VPS28-203ENST00000524521 BMP2KLQ5H9B9 411 aa24.5■■□□□ 1.51
VPS28-203ENST00000524521 GPATCH4Q5T3I0 446 aaKnown RBP24.5■■□□□ 1.51
VPS28-203ENST00000524521 CYB5R4Q7L1T6 521 aa24.5■■□□□ 1.51
VPS28-203ENST00000524521 NRBP1Q9UHY1 535 aa24.5■■□□□ 1.51
VPS28-203ENST00000524521 CNPY2Q9Y2B0 182 aa24.5■■□□□ 1.51
VPS28-203ENST00000524521 NR2E3Q9Y5X4 410 aa24.5■■□□□ 1.51
VPS28-203ENST00000524521 POTEB2H3BUK9 544 aa24.49■■□□□ 1.51
VPS28-203ENST00000524521 TAL1P17542 331 aaPredicted RBP24.49■■□□□ 1.51
VPS28-203ENST00000524521 MUM1L1Q5H9M0 696 aa24.49■■□□□ 1.51
VPS28-203ENST00000524521 MSL3Q8N5Y2 521 aaKnown RBP24.49■■□□□ 1.51
VPS28-203ENST00000524521 ESYT1Q9BSJ8 1104 aa24.49■■□□□ 1.51
VPS28-203ENST00000524521 UBA5Q9GZZ9 404 aa24.49■■□□□ 1.51
VPS28-203ENST00000524521 RBM8AQ9Y5S9 174 aaKnown RBP24.49■■□□□ 1.51
VPS28-203ENST00000524521 TAF6LQ9Y6J9 622 aa24.49■■□□□ 1.51
VPS28-203ENST00000524521 E7EWF7 191 aa24.48■■□□□ 1.51
VPS28-203ENST00000524521 CNTN2Q02246 1040 aa24.48■■□□□ 1.51
VPS28-203ENST00000524521 IFIT1BQ5T764 474 aaKnown RBP24.48■■□□□ 1.51
VPS28-203ENST00000524521 ZNF467Q7Z7K2 595 aaPredicted RBP24.48■■□□□ 1.51
VPS28-203ENST00000524521 RALYLQ86SE5 291 aaKnown RBP24.48■■□□□ 1.51
VPS28-203ENST00000524521 A1CFQ9NQ94 594 aaKnown RBP24.48■■□□□ 1.51
VPS28-203ENST00000524521 SYNGAP1Q96PV0 1343 aa24.47■■□□□ 1.51
VPS28-203ENST00000524521 SNAI1O95863 264 aaPredicted RBP24.47■■□□□ 1.51
VPS28-203ENST00000524521 MYCNP04198 464 aaPredicted RBP24.47■■□□□ 1.51
VPS28-203ENST00000524521 MAMDC4Q6UXC1 1216 aa24.47■■□□□ 1.51
VPS28-203ENST00000524521 ARRDC4Q8NCT1 418 aa24.47■■□□□ 1.51
VPS28-203ENST00000524521 NCOA7Q8NI08 942 aa24.47■■□□□ 1.51
VPS28-203ENST00000524521 CPVLQ9H3G5 476 aa24.47■■□□□ 1.51
VPS28-203ENST00000524521 PFASO15067 1338 aa24.46■■□□□ 1.51
VPS28-203ENST00000524521 ZNF865P0CJ78 1059 aaPredicted RBP24.46■■□□□ 1.51
VPS28-203ENST00000524521 COL6A1P12109 1028 aa24.46■■□□□ 1.51
VPS28-203ENST00000524521 SEC23AQ15436 765 aa24.46■■□□□ 1.51
VPS28-203ENST00000524521 GJC2Q5T442 439 aaPredicted RBP24.46■■□□□ 1.51
VPS28-203ENST00000524521 NSMFQ6X4W1 530 aa24.46■■□□□ 1.51
VPS28-203ENST00000524521 FGD4Q96M96 766 aa24.46■■□□□ 1.51
VPS28-203ENST00000524521 LSG1Q9H089 658 aaKnown RBP24.46■■□□□ 1.51
VPS28-203ENST00000524521 SMCHD1A6NHR9 2005 aa24.45■■□□□ 1.51
VPS28-203ENST00000524521 FRMPD3Q5JV73 1810 aa24.45■■□□□ 1.5
VPS28-203ENST00000524521 IFIT3O14879 490 aaKnown RBP24.45■■□□□ 1.5
VPS28-203ENST00000524521 PARP1P09874 1014 aaKnown RBP24.45■■□□□ 1.5
VPS28-203ENST00000524521 ASPRV1Q53RT3 343 aa24.45■■□□□ 1.5
VPS28-203ENST00000524521 STOX1Q6ZVD7 989 aa24.45■■□□□ 1.5
VPS28-203ENST00000524521 FAM133AQ8N9E0 248 aa24.45■■□□□ 1.5
VPS28-203ENST00000524521 SENP6Q9GZR1 1112 aaPredicted RBP24.45■■□□□ 1.5
VPS28-203ENST00000524521 ERICH2A1L162 156 aa24.44■■□□□ 1.5
VPS28-203ENST00000524521 DNM1LO00429 736 aa24.44■■□□□ 1.5
VPS28-203ENST00000524521 RARBP10826 455 aa24.44■■□□□ 1.5
VPS28-203ENST00000524521 CHST3Q7LGC8 479 aa24.44■■□□□ 1.5
VPS28-203ENST00000524521 ANO2Q9NQ90 1003 aa24.44■■□□□ 1.5
VPS28-203ENST00000524521 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.44■■□□□ 1.5
VPS28-203ENST00000524521 CYP39A1Q9NYL5 469 aa24.44■■□□□ 1.5
VPS28-203ENST00000524521 ZHX1Q9UKY1 873 aaPredicted RBP24.44■■□□□ 1.5
VPS28-203ENST00000524521 PNMA2Q9UL42 364 aa24.44■■□□□ 1.5
VPS28-203ENST00000524521 SOWAHBA6NEL2 793 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 KBTBD13C9JR72 458 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 AKR1A1P14550 325 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 ACVR2BQ13705 512 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 ARMCX2Q7L311 632 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 CCDC144CPQ8IYA2 1237 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 C7orf61Q8IZ16 206 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 XPNPEP3Q9NQH7 507 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 FAM184BQ9ULE4 1060 aa24.43■■□□□ 1.5
VPS28-203ENST00000524521 NFIBO00712 420 aa24.42■■□□□ 1.5
VPS28-203ENST00000524521 DHX16O60231 1041 aaKnown RBP24.42■■□□□ 1.5
VPS28-203ENST00000524521 SART3Q15020 963 aaKnown RBP24.42■■□□□ 1.5
VPS28-203ENST00000524521 CASC1Q6TDU7 716 aa24.42■■□□□ 1.5
VPS28-203ENST00000524521 ADGRF4Q8IZF3 695 aa24.42■■□□□ 1.5
VPS28-203ENST00000524521 ABHD16BQ9H3Z7 469 aa24.42■■□□□ 1.5
VPS28-203ENST00000524521 VAT1LQ9HCJ6 419 aa24.42■■□□□ 1.5
VPS28-203ENST00000524521 CEP290O15078 2479 aa24.42■■□□□ 1.5
VPS28-203ENST00000524521 ASB14A6NK59 587 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms