RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ERMNQ8TAM6 284 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 ERO1AQ96HE7 468 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 OSBPL5Q9H0X9 879 aaPredicted RBP11.38□□□□□ -0.59
MCF2-209ENST00000520602 DISC1Q9NRI5 854 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 PCDHA12Q9UN75 941 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.38□□□□□ -0.59
MCF2-209ENST00000520602 ERCC6LQ2NKX8 1250 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 NELFCDQ8IXH7 590 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 GOLGA6L1Q8N7Z2 621 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.38□□□□□ -0.59
MCF2-209ENST00000520602 PKD2L1Q9P0L9 805 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 SAMM50Q9Y512 469 aa11.38□□□□□ -0.59
MCF2-209ENST00000520602 CHMP2AO43633 222 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 CFBP00751 764 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 HERC4Q5GLZ8 1057 aaPredicted RBP11.37□□□□□ -0.59
MCF2-209ENST00000520602 CERKQ8TCT0 537 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 MASTLQ96GX5 879 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 IL17RBQ9NRM6 502 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 ACTN4O43707 911 aaKnown RBP11.37□□□□□ -0.59
MCF2-209ENST00000520602 RAD17O75943 681 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 CRKP46108 304 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 COPB1P53618 953 aaKnown RBP11.37□□□□□ -0.59
MCF2-209ENST00000520602 CCZ1BP86790 482 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 CCZ1P86791 482 aaPredicted RBP11.37□□□□□ -0.59
MCF2-209ENST00000520602 NCAPH2Q6IBW4 605 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 SH3GLB2Q9NR46 395 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 DDX25Q9UHL0 483 aaKnown RBP11.37□□□□□ -0.59
MCF2-209ENST00000520602 PCDHA6Q9UN73 950 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 PCDHA8Q9Y5H6 950 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 COL18A1P39060 1754 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 GPR75-ASB3A0A0A6YYF3 556 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 PSDA5PKW4 1024 aaPredicted RBP11.37□□□□□ -0.59
MCF2-209ENST00000520602 TRIM49BA6NDI0 452 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 IGSF3O75054 1194 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 KIF20AO95235 890 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 CCDC181Q5TID7 509 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 ZNF658Q5TYW1 1059 aaPredicted RBP11.37□□□□□ -0.59
MCF2-209ENST00000520602 TTBK2Q6IQ55 1244 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 CCDC42Q96M95 316 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 CRAMP1Q96RY5 1269 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 TMEM60Q9H2L4 133 aa11.37□□□□□ -0.59
MCF2-209ENST00000520602 H7C1D1 291 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 TBCAO75347 108 aaKnown RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 TUBB4AP04350 444 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 CHRNA5P30532 468 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 PPP4CP60510 307 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 DLGAP5Q15398 846 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 KMT5BQ4FZB7 885 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 PRR16Q569H4 304 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 CCDC174Q6PII3 467 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 TMED8Q6PL24 325 aaPredicted RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 ZNF384Q8TF68 577 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 TDRD3Q9H7E2 651 aaKnown RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 JADE2Q9NQC1 790 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 ATP6V0A2Q9Y487 856 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 ATRNO75882 1429 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 CTAGE9A4FU28 777 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 SOWAHDA6NJG2 315 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 STX10O60499 249 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 CYLC1P35663 651 aaPredicted RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 TNNT3P45378 269 aaPredicted RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 ABCB5Q2M3G0 1257 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 CNKSR1Q969H4 720 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 CSRNP1Q96S65 589 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 SWAP70Q9UH65 585 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 STRCP1A6NGW2 1772 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 USP17L10C9JJH3 530 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 C21orf2O43822 256 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 USO1O60763 962 aaKnown RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 MCM6Q14566 821 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 NCAPHQ15003 741 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 LRRC41Q15345 812 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 HSP90B2PQ58FF3 399 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 GPATCH4Q5T3I0 446 aaKnown RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 CCDC17Q96LX7 622 aa11.36□□□□□ -0.59
MCF2-209ENST00000520602 RTFDC1Q9BY42 306 aaPredicted RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 FAM207AQ9NSI2 230 aaPredicted RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 SEPT11Q9NVA2 429 aaKnown RBP11.36□□□□□ -0.59
MCF2-209ENST00000520602 POTEMA6NI47 508 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 POLR3GO15318 223 aaPredicted RBP11.35□□□□□ -0.59
MCF2-209ENST00000520602 PRCPP42785 496 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 KRT31Q15323 416 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 KIFC2Q96AC6 838 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 CCDC94Q9BW85 323 aaPredicted RBP11.35□□□□□ -0.59
MCF2-209ENST00000520602 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.35□□□□□ -0.59
MCF2-209ENST00000520602 MAD2L2Q9UI95 211 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L15C9J2P7 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L13C9JLJ4 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L11C9JVI0 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L18D6R9N7 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L22D6RA61 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L17D6RBQ6 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L19D6RCP7 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L20D6RJB6 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 CACNB1Q02641 598 aaPredicted RBP11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L24Q0WX57 530 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 CCDC122Q5T0U0 273 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 USP17L6PQ6QN14 398 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 CYP26C1Q6V0L0 522 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 C16orf86Q6ZW13 317 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms