RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 LENG1Q96BZ8 264 aaPredicted RBP13.5□□□□□ -0.25
VCAN-212ENST00000515397 PURBQ96QR8 312 aaKnown RBP13.5□□□□□ -0.25
VCAN-212ENST00000515397 TINF2Q9BSI4 451 aa13.5□□□□□ -0.25
VCAN-212ENST00000515397 KAT14Q9H8E8 782 aa13.5□□□□□ -0.25
VCAN-212ENST00000515397 SENP2Q9HC62 589 aa13.5□□□□□ -0.25
VCAN-212ENST00000515397 RNF146Q9NTX7 359 aa13.5□□□□□ -0.25
VCAN-212ENST00000515397 DDX20Q9UHI6 824 aaKnown RBP13.5□□□□□ -0.25
VCAN-212ENST00000515397 ZNFX1Q9P2E3 1918 aaKnown RBP13.49□□□□□ -0.25
VCAN-212ENST00000515397 TNKSO95271 1327 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 RAD50Q92878 1312 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 PLA2G6O60733 806 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 COPB2P35606 906 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 DGKHQ86XP1 1220 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 PNMA1Q8ND90 353 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 CHST13Q8NET6 341 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 MAP4K1Q92918 833 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 ESYT1Q9BSJ8 1104 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 KRT23Q9C075 422 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 C11orf49Q9H6J7 331 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 VAT1LQ9HCJ6 419 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 CCPG1Q9ULG6 757 aa13.49□□□□□ -0.25
VCAN-212ENST00000515397 RBM8AQ9Y5S9 174 aaKnown RBP13.49□□□□□ -0.25
VCAN-212ENST00000515397 U3KPZ7 1027 aaPredicted RBP13.49□□□□□ -0.25
VCAN-212ENST00000515397 SMCHD1A6NHR9 2005 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 DNAJC25-GNG10A0A024R161 153 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 E7EWF7 191 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 POTEB2H3BUK9 544 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 SNAI1O95863 264 aaPredicted RBP13.48□□□□□ -0.25
VCAN-212ENST00000515397 OAZ1P54368 228 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 BTNL9Q6UXG8 535 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 NSMFQ6X4W1 530 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 KIAA1211Q6ZU35 1233 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 FGD4Q96M96 766 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 UBAC1Q9BSL1 405 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 HTATIP2Q9BUP3 242 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 LSG1Q9H089 658 aaKnown RBP13.48□□□□□ -0.25
VCAN-212ENST00000515397 RANBP17Q9H2T7 1088 aaKnown RBP13.48□□□□□ -0.25
VCAN-212ENST00000515397 ACAD9Q9H845 621 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 CNNM2Q9H8M5 875 aa13.48□□□□□ -0.25
VCAN-212ENST00000515397 A1CFQ9NQ94 594 aaKnown RBP13.48□□□□□ -0.25
VCAN-212ENST00000515397 GPHNQ9NQX3 736 aaPredicted RBP13.48□□□□□ -0.25
VCAN-212ENST00000515397 PFASO15067 1338 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 SOWAHBA6NEL2 793 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 SEPT4O43236 478 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 EVI5O60447 810 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 NEFLP07196 543 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 ZNF865P0CJ78 1059 aaPredicted RBP13.47□□□□□ -0.25
VCAN-212ENST00000515397 SNHG28P0DPA3 235 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 FDX1P10109 184 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 ATN1P54259 1190 aaPredicted RBP13.47□□□□□ -0.25
VCAN-212ENST00000515397 IRX5P78411 483 aaPredicted RBP13.47□□□□□ -0.25
VCAN-212ENST00000515397 TRDNQ13061 729 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 IFIT1BQ5T764 474 aaKnown RBP13.47□□□□□ -0.25
VCAN-212ENST00000515397 C7orf61Q8IZ16 206 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 STAG2Q8N3U4 1231 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 ANKS1AQ92625 1134 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 SENP6Q9GZR1 1112 aaPredicted RBP13.47□□□□□ -0.25
VCAN-212ENST00000515397 ANO2Q9NQ90 1003 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 FBXO40Q9UH90 709 aa13.47□□□□□ -0.25
VCAN-212ENST00000515397 DIS3Q9Y2L1 958 aaKnown RBP13.47□□□□□ -0.25
VCAN-212ENST00000515397 NFIBO00712 420 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 IFIT3O14879 490 aaKnown RBP13.46□□□□□ -0.25
VCAN-212ENST00000515397 PGK1P00558 417 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 ICAM1P05362 532 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 PTGS1P23219 599 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 ANTXR2P58335 489 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 SEC23AQ15436 765 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 USH1GQ495M9 461 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 CCDC178Q5BJE1 867 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 BMP2KLQ5H9B9 411 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 CCDC144CPQ8IYA2 1237 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 ADGRF4Q8IZF3 695 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 ANKLE1Q8NAG6 615 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 FERMT2Q96AC1 680 aa13.46□□□□□ -0.25
VCAN-212ENST00000515397 ZHX1Q9UKY1 873 aaPredicted RBP13.46□□□□□ -0.25
VCAN-212ENST00000515397 ZMYND8Q9ULU4 1186 aaPredicted RBP13.46□□□□□ -0.25
VCAN-212ENST00000515397 ASTN1O14525 1302 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 SLC27A2O14975 620 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 DHX16O60231 1041 aaKnown RBP13.45□□□□□ -0.26
VCAN-212ENST00000515397 SYN1P17600 705 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 BAATQ14032 418 aaPredicted RBP13.45□□□□□ -0.26
VCAN-212ENST00000515397 LRRC26Q2I0M4 334 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 EEPD1Q7L9B9 569 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 RALYLQ86SE5 291 aaKnown RBP13.45□□□□□ -0.26
VCAN-212ENST00000515397 FAM133AQ8N9E0 248 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 TBC1D5Q92609 795 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.45□□□□□ -0.26
VCAN-212ENST00000515397 CYP39A1Q9NYL5 469 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 COLQQ9Y215 455 aaPredicted RBP13.45□□□□□ -0.26
VCAN-212ENST00000515397 CNPY2Q9Y2B0 182 aa13.45□□□□□ -0.26
VCAN-212ENST00000515397 PTPDC1A2A3K4 754 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 PARP1P09874 1014 aaKnown RBP13.44□□□□□ -0.26
VCAN-212ENST00000515397 COL6A1P12109 1028 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 ACVR2BQ13705 512 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 LRRC41Q15345 812 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 TKFCQ3LXA3 575 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 TMEM67Q5HYA8 995 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 TMEM63BQ5T3F8 832 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 GPATCH4Q5T3I0 446 aaKnown RBP13.44□□□□□ -0.26
VCAN-212ENST00000515397 CREB3L3Q68CJ9 461 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms