RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 CTAGE5O15320 804 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 ORC4O43929 436 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 RARBP10826 455 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 SDSP20132 328 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 SLC1A4P43007 532 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 EPHB4P54760 987 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 NUCB1Q02818 461 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 TLE2Q04725 743 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 C9orf50Q5SZB4 431 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 CCDC174Q6PII3 467 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 FAM133AQ8N9E0 248 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 KLHDC9Q8NEP7 349 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 BADQ92934 168 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 RILPL2Q969X0 211 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 TMEM47Q9BQJ4 181 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 NRBP1Q9UHY1 535 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 SYNPO2Q9UMS6 1093 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 TRIM6-TRIM34B2RNG4 842 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 KBTBD13C9JR72 458 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 SLC3A2P08195 630 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 ACVR2BQ13705 512 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 SHHQ15465 462 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 RRP12Q5JTH9 1297 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 CHD1LQ86WJ1 897 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 TBC1D10CQ8IV04 446 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 CCDC144CPQ8IYA2 1237 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 ANKRD35Q8N283 1001 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 TRERF1Q96PN7 1200 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 IL25Q9H293 177 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 A1CFQ9NQ94 594 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 PDLIM7Q9NR12 457 aa13.24□□□□□ -0.29
LIMCH1-214ENST00000512228 FRMPD2Q68DX3 1309 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 SYNGAP1Q96PV0 1343 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 SYNRGQ9UMZ2 1314 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 A0A1W2PQ45 241 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 A0A1W2PQY0 241 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 AKR1A1P14550 325 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 COPB2P35606 906 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 STAT2P52630 851 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 OAZ1P54368 228 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 KCNA10Q16322 511 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 CCDC144BQ3MJ40 725 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 C1orf53Q5VUE5 145 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 ARMCX2Q7L311 632 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 ZNF467Q7Z7K2 595 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 DEFB123Q8N688 67 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 CHST13Q8NET6 341 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 RWDD1Q9H446 243 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 GPCPD1Q9NPB8 672 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 PRDM5Q9NQX1 630 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 PDGFCQ9NRA1 345 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 ZHX1Q9UKY1 873 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 ISY1Q9ULR0 285 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 CNPY2Q9Y2B0 182 aa13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 SUPT16HQ9Y5B9 1047 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-214ENST00000512228 PLA2G6O60733 806 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 ALAS1P13196 640 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 PDE4AP27815 886 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 ACLYP53396 1101 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 MSL3Q8N5Y2 521 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 CHURC1Q8WUH1 139 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 ZKSCAN3Q9BRR0 538 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 CPVLQ9H3G5 476 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 OSBPL3Q9H4L5 887 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 RNF146Q9NTX7 359 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 TCP11L1Q9NUJ3 509 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 MTMR10Q9NXD2 777 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 ZBTB47Q9UFB7 747 aaPredicted RBP13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 FAM184BQ9ULE4 1060 aa13.22□□□□□ -0.29
LIMCH1-214ENST00000512228 CCDC171Q6TFL3 1326 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 POTEB2H3BUK9 544 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 DUSP11O75319 330 aaKnown RBP13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 BEX3Q00994 111 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 FAAP100Q0VG06 881 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 CWC27Q6UX04 472 aaKnown RBP13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 BTNL9Q6UXG8 535 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 RNF180Q86T96 592 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 FAM160B2Q86V87 743 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 LBHD1Q9BQE6 289 aaPredicted RBP13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 TOMM22Q9NS69 142 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 CYP39A1Q9NYL5 469 aa13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 CTDP1Q9Y5B0 961 aaPredicted RBP13.21□□□□□ -0.29
LIMCH1-214ENST00000512228 NEDD4P46934 1319 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 RBAK-RBAKDNI3L0D1 243 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 PQBP1O60828 265 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 PDHBP11177 359 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 TOP1P11387 765 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 CDK7P50613 346 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 IKQ13123 557 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 AKNAD1Q5T1N1 836 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 TAPT1Q6NXT6 567 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 EEPD1Q7L9B9 569 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 CLEC4DQ8WXI8 215 aa13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 TSEN34Q9BSV6 310 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 UPF3AQ9H1J1 476 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 RANBP17Q9H2T7 1088 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-214ENST00000512228 ABHD16BQ9H3Z7 469 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms