RNA–Protein interactions for RNA: ENST00000497342.1

CKS1BP2-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 2, humanhuman

BASIC

Gene CKS1BP2, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP2-201ENST00000497342 RIMS2Q9UQ26 1411 aa3.25□□□□□ -1.89
CKS1BP2-201ENST00000497342 XRN1Q8IZH2 1706 aaKnown RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PEAK1Q9H792 1746 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 LMTK2Q8IWU2 1503 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PASKQ96RG2 1323 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 TOPAZ1Q8N9V7 1692 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PRUNE2Q8WUY3 3088 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 SBF2Q86WG5 1849 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 A0A1W2PQU0 124 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 GPR39O43194 453 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 CA12O43570 354 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 BRINP1O60477 761 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 DNAJA2O60884 412 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 SMNDC1O75940 238 aaKnown RBP eCLIP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 ABLIM3O94929 683 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 C6orf222P0C671 652 aaPredicted RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 NAT2P11245 290 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 BMP2P12643 396 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 CPEP16870 476 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 BPIP17213 487 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PTPRAP18433 802 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 NEK2P51955 445 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PMS1P54277 932 aaKnown RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 ATP11AP98196 1134 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 ZYXQ15942 572 aaKnown RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 KIF4BQ2VIQ3 1234 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 ZNF468Q5VIY5 522 aaPredicted RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 TSHZ1Q6ZSZ6 1077 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 ARHGAP27Q6ZUM4 889 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 KRT28Q7Z3Y7 464 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 TRIM46Q7Z4K8 759 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 LRRTM3Q86VH5 581 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 GRIN3AQ8TCU5 1115 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 JARID2Q92833 1246 aaPredicted RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PNMA5Q96PV4 448 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 SLC9A7Q96T83 725 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 P2RX7Q99572 595 aaKnown RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 MENTQ9BUN1 341 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 TARS2Q9BW92 718 aaKnown RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PUS7LQ9H0K6 701 aaKnown RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 ANTXR1Q9H6X2 564 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PRDM16Q9HAZ2 1276 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 BSDC1Q9NW68 430 aaPredicted RBP3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 REV1Q9UBZ9 1251 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 PFDN2Q9UHV9 154 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 DNMT3LQ9UJW3 386 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 NALCNQ8IZF0 1738 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 GPR179Q6PRD1 2367 aa3.24□□□□□ -1.89
CKS1BP2-201ENST00000497342 SPTBN4Q9H254 2564 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 TRAV20A0A0B4J274 112 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 IFRD1O00458 451 aaPredicted RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 BCL9O00512 1426 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 AKAP10O43572 662 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 CREB3O43889 395 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 ZEB2O60315 1214 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 TRPA1O75762 1119 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 DNAJC8O75937 253 aaPredicted RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 RASGRP1O95267 797 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 RHOQP17081 205 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 LMNB1P20700 586 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 AFF1P51825 1210 aaKnown RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 SUMO1P63165 101 aaKnown RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 SLC7A5Q01650 507 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 PDE4BQ07343 736 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 FOXC1Q12948 553 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 BIRC2Q13490 618 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 PIN1Q13526 163 aaPredicted RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 NEUROD1Q13562 356 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 HSP90AA2PQ14568 343 aaPredicted RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 PPP2R5AQ15172 486 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 TESK1Q15569 626 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 FAM102BQ5T8I3 360 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 CDC42BPAQ5VT25 1732 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 CXorf57Q6NSI4 855 aaKnown RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 KRT25Q7Z3Z0 450 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 CDAN1Q8IWY9 1227 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 SVIPQ8NHG7 77 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 TSR2Q969E8 191 aaKnown RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 RNF166Q96A37 237 aaPredicted RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 CHMP4CQ96CF2 233 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 RCC1LQ96I51 464 aaKnown RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 SLC13A1Q9BZW2 595 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 NUCKS1Q9H1E3 243 aaKnown RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 OSGEPQ9NPF4 335 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 ENAMQ9NRM1 1142 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 PRR13Q9NZ81 148 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 GDF2Q9UK05 429 aaPredicted RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 STXBP5LQ9Y2K9 1186 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 COMMD10Q9Y6G5 202 aa3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 BRD4O60885 1362 aaPredicted RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 COL14A1Q05707 1796 aaKnown RBP3.23□□□□□ -1.89
CKS1BP2-201ENST00000497342 NAV2Q8IVL1 2488 aa3.22□□□□□ -1.89
CKS1BP2-201ENST00000497342 ATP7BP35670 1465 aa3.22□□□□□ -1.89
CKS1BP2-201ENST00000497342 MBD5Q9P267 1494 aa3.22□□□□□ -1.89
CKS1BP2-201ENST00000497342 KMT2BQ9UMN6 2715 aaPredicted RBP3.22□□□□□ -1.89
CKS1BP2-201ENST00000497342 LTBP1Q14766 1721 aa3.22□□□□□ -1.89
CKS1BP2-201ENST00000497342 LRRIQ1Q96JM4 1722 aa3.22□□□□□ -1.89
CKS1BP2-201ENST00000497342 TNS3Q68CZ2 1445 aa3.22□□□□□ -1.89
CKS1BP2-201ENST00000497342 A0A087WZG4 1122 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms