RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 HOXC6P09630 235 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 LIFRP42702 1097 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 KCTD2Q14681 263 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 GRM4Q14833 912 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TKFCQ3LXA3 575 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 NFXL1Q6ZNB6 911 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 DHX32Q7L7V1 743 aaKnown RBP19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 DPP9Q86TI2 863 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TRIB2Q92519 343 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 JAKMIP1Q96N16 626 aaKnown RBP19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CPVLQ9H3G5 476 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 FBXO40Q9UH90 709 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 MAD2L2Q9UI95 211 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CCPG1Q9ULG6 757 aa19■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 EIF5BO60841 1220 aaKnown RBP18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 DDAH1O94760 285 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 EXOSC10Q01780 885 aaKnown RBP18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TROAPQ12815 778 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CCL14Q16627 93 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 ZNF654Q8IZM8 581 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 STAG2Q8N3U4 1231 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 NPLOC4Q8TAT6 608 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 HOMER2Q9NSB8 354 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 SLC5A4Q9NY91 659 aa18.99■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 PALM3A6NDB9 673 aaPredicted RBP18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 COBLO75128 1261 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 MYCP01106 439 aaPredicted RBP18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 ALAS1P13196 640 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 ADGRF4Q8IZF3 695 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 NUP133Q8WUM0 1156 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TCEANC2Q96MN5 208 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 MAP3K14Q99558 947 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 ACAD9Q9H845 621 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 RNF146Q9NTX7 359 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 PNMA2Q9UL42 364 aa18.98■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 KLRF2D3W0D1 207 aa18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 DHX16O60231 1041 aaKnown RBP18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 PSMA5P28066 241 aa18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 SOX10P56693 466 aa18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 MTFR1Q15390 333 aa18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CDC37Q16543 378 aaPredicted RBP18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 BLOC1S2Q6QNY1 142 aa18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TRERF1Q96PN7 1200 aa18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 MYL10Q9BUA6 226 aa18.97■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 PGK2P07205 417 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CALM1P0DP23 149 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CALM2P0DP24 149 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CALM3P0DP25 149 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CCL5P13501 91 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CPA1P15085 419 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TAL1P17542 331 aaPredicted RBP18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TRIM32Q13049 653 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 SGMS1Q86VZ5 419 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 ANKRD35Q8N283 1001 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CTCFLQ8NI51 663 aaPredicted RBP18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 DDX11Q96FC9 970 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 TMEM106CQ9BVX2 250 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 FLRT1Q9NZU1 646 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 SLC12A7Q9Y666 1083 aa18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 RBBP6Q7Z6E9 1792 aaKnown RBP18.96■□□□□ 0.63
MSH5-SAPCD1-206ENST00000491552 CASTP20810 708 aaKnown RBP18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 KIF5BP33176 963 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 MUM1L1Q5H9M0 696 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 MFSD14CQ5VZR4 134 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 OLFML2BQ68BL8 750 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 MAML3Q96JK9 1138 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 UNC93B1Q9H1C4 597 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 JMJD4Q9H9V9 463 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 VAT1LQ9HCJ6 419 aa18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 DIS3Q9Y2L1 958 aaKnown RBP18.95■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 DNAJC25-GNG10A0A024R161 153 aa18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 PRKAR2AP13861 404 aaKnown RBP18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 RPS6KB1P23443 525 aa18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 FGD1P98174 961 aa18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 QRICH1Q2TAL8 776 aa18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ZNF792Q3KQV3 632 aa18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 SYNE3Q6ZMZ3 975 aa18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 RNF208Q9H0X6 261 aa18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ZNFX1Q9P2E3 1918 aaKnown RBP18.94■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 PLXNA1Q9UIW2 1896 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 POTEFA5A3E0 1075 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 IGHA2P01877 340 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 RXRAP19793 462 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 CACNB2Q08289 660 aaPredicted RBP18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 MAP3K21Q5TCX8 1036 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 APOA5Q6Q788 366 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 MICU3Q86XE3 530 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 MTMR8Q96EF0 704 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 RIOX1Q9H6W3 641 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 HMX1Q9NP08 348 aaPredicted RBP18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 A1CFQ9NQ94 594 aaKnown RBP18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 GTF3C3Q9Y5Q9 886 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 PFASO15067 1338 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 RPTORQ8N122 1335 aa18.93■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 GNAQP50148 359 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 SLC35G1Q2M3R5 365 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 USH1GQ495M9 461 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 C8orf34Q49A92 452 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 Q6ZUG5 572 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms