RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 PPP4R2Q9NY27 417 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 CCPG1Q9ULG6 757 aa17.55■□□□□ 0.4
TRIM54-204ENST00000488321 PLXNB2O15031 1838 aa17.54■□□□□ 0.4
TRIM54-204ENST00000488321 IFIT3O14879 490 aaKnown RBP17.54■□□□□ 0.4
TRIM54-204ENST00000488321 CAPN2P17655 700 aa17.54■□□□□ 0.4
TRIM54-204ENST00000488321 TKFCQ3LXA3 575 aa17.54■□□□□ 0.4
TRIM54-204ENST00000488321 STOX1Q6ZVD7 989 aa17.54■□□□□ 0.4
TRIM54-204ENST00000488321 TRERF1Q96PN7 1200 aa17.54■□□□□ 0.4
TRIM54-204ENST00000488321 RANBP17Q9H2T7 1088 aaKnown RBP17.54■□□□□ 0.4
TRIM54-204ENST00000488321 DIS3Q9Y2L1 958 aaKnown RBP17.54■□□□□ 0.4
TRIM54-204ENST00000488321 ICAM1P05362 532 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 CYBAP13498 195 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 TAL1P17542 331 aaPredicted RBP17.53■□□□□ 0.4
TRIM54-204ENST00000488321 SART3Q15020 963 aaKnown RBP17.53■□□□□ 0.4
TRIM54-204ENST00000488321 PRAMEF19Q5SWL8 479 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 CHST3Q7LGC8 479 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 TRPV1Q8NER1 839 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 TINF2Q9BSI4 451 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 UBA5Q9GZZ9 404 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 CPVLQ9H3G5 476 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 DDX20Q9UHI6 824 aaKnown RBP17.53■□□□□ 0.4
TRIM54-204ENST00000488321 MYH4Q9Y623 1939 aa17.53■□□□□ 0.4
TRIM54-204ENST00000488321 SLC27A2O14975 620 aa17.52■□□□□ 0.4
TRIM54-204ENST00000488321 DHX16O60231 1041 aaKnown RBP17.52■□□□□ 0.4
TRIM54-204ENST00000488321 PARP1P09874 1014 aaKnown RBP17.52■□□□□ 0.4
TRIM54-204ENST00000488321 SEC23AQ15436 765 aa17.52■□□□□ 0.4
TRIM54-204ENST00000488321 ASPRV1Q53RT3 343 aa17.52■□□□□ 0.4
TRIM54-204ENST00000488321 ERICH6BQ5W0A0 696 aa17.52■□□□□ 0.4
TRIM54-204ENST00000488321 CREB3L3Q68CJ9 461 aa17.52■□□□□ 0.4
TRIM54-204ENST00000488321 DIS3LQ8TF46 1054 aaKnown RBP17.52■□□□□ 0.4
TRIM54-204ENST00000488321 PAWRQ96IZ0 340 aaKnown RBP17.52■□□□□ 0.4
TRIM54-204ENST00000488321 OGDHLQ9ULD0 1010 aa17.52■□□□□ 0.4
TRIM54-204ENST00000488321 RBBP6Q7Z6E9 1792 aaKnown RBP17.52■□□□□ 0.4
TRIM54-204ENST00000488321 DNAJC25-GNG10A0A024R161 153 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 POTEB2H3BUK9 544 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 MSCO60682 206 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 IGHA2P01877 340 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 WTAPQ15007 396 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 MUM1L1Q5H9M0 696 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 TMEM67Q5HYA8 995 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 ANO1Q5XXA6 986 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 LHX8Q68G74 356 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 NSMFQ6X4W1 530 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 NECAB2Q7Z6G3 386 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 UBE2Q1Q7Z7E8 422 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 ANKLE1Q8NAG6 615 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 DPF3Q92784 378 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 HTATIP2Q9BUP3 242 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 A1CFQ9NQ94 594 aaKnown RBP17.51■□□□□ 0.39
TRIM54-204ENST00000488321 CNPY2Q9Y2B0 182 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 LAMA4Q16363 1823 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 ZNF236Q9UL36 1845 aa17.51■□□□□ 0.39
TRIM54-204ENST00000488321 KIAA0100Q14667 2235 aaKnown RBP17.51■□□□□ 0.39
TRIM54-204ENST00000488321 MKI67P46013 3256 aaKnown RBP17.5■□□□□ 0.39
TRIM54-204ENST00000488321 TNRC18O15417 2968 aaPredicted RBP17.5■□□□□ 0.39
TRIM54-204ENST00000488321 NECTIN1Q15223 517 aa17.5■□□□□ 0.39
TRIM54-204ENST00000488321 RNF20Q5VTR2 975 aa17.5■□□□□ 0.39
TRIM54-204ENST00000488321 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.5■□□□□ 0.39
TRIM54-204ENST00000488321 MB21D2Q8IYB1 491 aaPredicted RBP17.5■□□□□ 0.39
TRIM54-204ENST00000488321 VAT1LQ9HCJ6 419 aa17.5■□□□□ 0.39
TRIM54-204ENST00000488321 DOCK3Q8IZD9 2030 aa17.5■□□□□ 0.39
TRIM54-204ENST00000488321 PFASO15067 1338 aa17.49■□□□□ 0.39
TRIM54-204ENST00000488321 PARP14Q460N5 1801 aa17.49■□□□□ 0.39
TRIM54-204ENST00000488321 SEPT4O43236 478 aa17.49■□□□□ 0.39
TRIM54-204ENST00000488321 MYCNP04198 464 aaPredicted RBP17.49■□□□□ 0.39
TRIM54-204ENST00000488321 ANTXR2P58335 489 aa17.49■□□□□ 0.39
TRIM54-204ENST00000488321 PRPF38BQ5VTL8 546 aaKnown RBP17.49■□□□□ 0.39
TRIM54-204ENST00000488321 SENP2Q9HC62 589 aa17.49■□□□□ 0.39
TRIM54-204ENST00000488321 PNMA2Q9UL42 364 aa17.49■□□□□ 0.39
TRIM54-204ENST00000488321 PRC1O43663 620 aa17.48■□□□□ 0.39
TRIM54-204ENST00000488321 MCM5P33992 734 aa17.48■□□□□ 0.39
TRIM54-204ENST00000488321 CNTN2Q02246 1040 aa17.48■□□□□ 0.39
TRIM54-204ENST00000488321 CDC37Q16543 378 aaPredicted RBP17.48■□□□□ 0.39
TRIM54-204ENST00000488321 USH1GQ495M9 461 aa17.48■□□□□ 0.39
TRIM54-204ENST00000488321 ZNF467Q7Z7K2 595 aaPredicted RBP17.48■□□□□ 0.39
TRIM54-204ENST00000488321 ADGRF4Q8IZF3 695 aa17.48■□□□□ 0.39
TRIM54-204ENST00000488321 MSL3Q8N5Y2 521 aaKnown RBP17.48■□□□□ 0.39
TRIM54-204ENST00000488321 C11orf49Q9H6J7 331 aa17.48■□□□□ 0.39
TRIM54-204ENST00000488321 NRBP1Q9UHY1 535 aa17.48■□□□□ 0.39
TRIM54-204ENST00000488321 ZHX1Q9UKY1 873 aaPredicted RBP17.48■□□□□ 0.39
TRIM54-204ENST00000488321 SYNGAP1Q96PV0 1343 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 PTPDC1A2A3K4 754 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 KLRF2D3W0D1 207 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 NFIBO00712 420 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 MAMDC4Q6UXC1 1216 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 CATIPQ7Z7H3 387 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 STAG2Q8N3U4 1231 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 FAM133AQ8N9E0 248 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.47■□□□□ 0.39
TRIM54-204ENST00000488321 CYP39A1Q9NYL5 469 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 COL11A1P12107 1806 aaPredicted RBP17.47■□□□□ 0.39
TRIM54-204ENST00000488321 WDR19Q8NEZ3 1342 aa17.47■□□□□ 0.39
TRIM54-204ENST00000488321 SNAI1O95863 264 aaPredicted RBP17.46■□□□□ 0.39
TRIM54-204ENST00000488321 ZNF865P0CJ78 1059 aaPredicted RBP17.46■□□□□ 0.39
TRIM54-204ENST00000488321 MNX1P50219 401 aaPredicted RBP17.46■□□□□ 0.39
TRIM54-204ENST00000488321 BAATQ14032 418 aaPredicted RBP17.46■□□□□ 0.39
TRIM54-204ENST00000488321 NFXL1Q6ZNB6 911 aa17.46■□□□□ 0.39
TRIM54-204ENST00000488321 ARMCX2Q7L311 632 aa17.46■□□□□ 0.39
TRIM54-204ENST00000488321 IGDCC4Q8TDY8 1250 aa17.46■□□□□ 0.39
TRIM54-204ENST00000488321 NUP133Q8WUM0 1156 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms