RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.08■□□□□ 0.48
COL7A1-210ENST00000487017 PTCH1Q13635 1447 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-210ENST00000487017 ZBED4O75132 1171 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 CCDC89Q8N998 374 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 VCX3BQ9H321 246 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 CRCPO75575 148 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 GOLGA8FQ08AF8 430 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 GOLGA8DPQ0D2H9 430 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 TUBGCP2Q9BSJ2 902 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 PPP1R12CQ9BZL4 782 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 DDX25Q9UHL0 483 aaKnown RBP18.08■□□□□ 0.48
COL7A1-210ENST00000487017 CUEDC2Q9H467 287 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 GREM2Q9H772 168 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 PRR16Q569H4 304 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 CPXCR1Q8N123 301 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 GRK7Q8WTQ7 553 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 METTL14Q9HCE5 456 aaKnown RBP18.07■□□□□ 0.48
COL7A1-210ENST00000487017 USP40Q9NVE5 1235 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 LAD1O00515 517 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 DAPK3O43293 454 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 SEC31AO94979 1220 aaKnown RBP18.07■□□□□ 0.48
COL7A1-210ENST00000487017 LARGE1O95461 756 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 CD19P15391 556 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 CHRNDQ07001 517 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 ADAM9Q13443 819 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 MAP3K15Q6ZN16 1313 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 GMNNO75496 209 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 GOLGA8HP0CJ92 632 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 EEF1GP26641 437 aaKnown RBP18.07■□□□□ 0.48
COL7A1-210ENST00000487017 HSPA2P54652 639 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 FAM26FQ5R3K3 315 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 MFSD14BQ5SR56 506 aa18.07■□□□□ 0.48
COL7A1-210ENST00000487017 SDCCAG8Q86SQ7 713 aaPredicted RBP18.07■□□□□ 0.48
COL7A1-210ENST00000487017 FTOQ9C0B1 505 aaKnown RBP eCLIP18.07■□□□□ 0.48
COL7A1-210ENST00000487017 N4BP1O75113 896 aaKnown RBP18.06■□□□□ 0.48
COL7A1-210ENST00000487017 H2AFZP0C0S5 128 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 RASSF2P50749 326 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 H2AFVQ71UI9 128 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 MIER3Q7Z3K6 550 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 DDX17Q92841 729 aaKnown RBP18.06■□□□□ 0.48
COL7A1-210ENST00000487017 DPH5Q9H2P9 285 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 KCNG1Q9UIX4 513 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 RESTQ13127 1097 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 ANKRD20A3Q5VUR7 823 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 RNF34Q969K3 372 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 TNNI1P19237 187 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 DMTNQ08495 405 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 CCT6BQ92526 530 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 MAN1B1Q9UKM7 699 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 NSMFQ6X4W1 530 aa18.06■□□□□ 0.48
COL7A1-210ENST00000487017 NOP56O00567 594 aaKnown RBP18.05■□□□□ 0.48
COL7A1-210ENST00000487017 PPP2R5DQ14738 602 aa18.05■□□□□ 0.48
COL7A1-210ENST00000487017 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.05■□□□□ 0.48
COL7A1-210ENST00000487017 KLHL14Q9P2G3 628 aa18.05■□□□□ 0.48
COL7A1-210ENST00000487017 RNF10Q8N5U6 811 aaKnown RBP18.05■□□□□ 0.48
COL7A1-210ENST00000487017 DHTKD1Q96HY7 919 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-210ENST00000487017 NEO1Q92859 1461 aa18.05■□□□□ 0.48
COL7A1-210ENST00000487017 PTPROQ16827 1216 aa18.05■□□□□ 0.48
COL7A1-210ENST00000487017 SAMD9LQ8IVG5 1584 aa18.05■□□□□ 0.48
COL7A1-210ENST00000487017 TROVE2P10155 538 aaKnown RBP eCLIP18.04■□□□□ 0.48
COL7A1-210ENST00000487017 GUCY2DQ02846 1103 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 A0A087WWV3 80 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 FAM170AA1A519 330 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 ENC1O14682 589 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 COBLO75128 1261 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 LTKP29376 864 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 RASSF7Q02833 373 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 OTUD6AQ7L8S5 288 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 CCDC117Q8IWD4 279 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-210ENST00000487017 COL4A3BPQ9Y5P4 624 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 AZI2Q9H6S1 392 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 ADCY8P40145 1251 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 GTF2IP78347 998 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 POLA2Q14181 598 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 CCDC38Q502W7 563 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 LRRC47Q8N1G4 583 aaKnown RBP18.04■□□□□ 0.48
COL7A1-210ENST00000487017 AFAP1L2Q8N4X5 818 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 RETREG2Q8NC44 543 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 GABPB2Q8TAK5 448 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-210ENST00000487017 CHURC1Q8WUH1 139 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 PCDHA4Q9UN74 947 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 TRIM37O94972 964 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 MMP1P03956 469 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 VSTM4Q8IW00 320 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 VCXQ9H320 206 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 RAB20Q9NX57 234 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 STK38LQ9Y2H1 464 aa18.04■□□□□ 0.48
COL7A1-210ENST00000487017 KRT19P08727 400 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 ADD2P35612 726 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 NECTIN1Q15223 517 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 PI4K2BQ8TCG2 481 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 TEKT1Q969V4 418 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 CPSF2Q9P2I0 782 aaKnown RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 ZFYVE16Q7Z3T8 1539 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 ZNF658Q5TYW1 1059 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 CCDC13Q8IYE1 715 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 ANKRD13CQ8N6S4 541 aa18.03■□□□□ 0.48
COL7A1-210ENST00000487017 RAB3IPQ96QF0 476 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-210ENST00000487017 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.03■□□□□ 0.483e-7■■■■□ 20.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms