RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 GABPAQ06546 454 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 DHX8Q14562 1220 aaKnown RBP10.42□□□□□ -0.74
COL12A1-208ENST00000486533 SEPT2Q15019 361 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 UBE3CQ15386 1083 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.42□□□□□ -0.74
COL12A1-208ENST00000486533 SLC44A5Q8NCS7 719 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 ACER1Q8TDN7 264 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 U2AF1L4Q8WU68 220 aaKnown RBP10.42□□□□□ -0.74
COL12A1-208ENST00000486533 DYNLL2Q96FJ2 89 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 KIAA1683Q9H0B3 1180 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 GDPD2Q9HCC8 539 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 TXNRD2Q9NNW7 524 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.42□□□□□ -0.74
COL12A1-208ENST00000486533 SLC4A4Q9Y6R1 1079 aa10.42□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L15C9J2P7 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L13C9JLJ4 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L11C9JVI0 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L18D6R9N7 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L22D6RA61 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L17D6RBQ6 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L19D6RCP7 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L20D6RJB6 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 PRKCSHP14314 528 aaPredicted RBP10.41□□□□□ -0.74
COL12A1-208ENST00000486533 VCAM1P19320 739 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 ERVK-9P63128 1117 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 ERVK-24P63145 666 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 DNM1Q05193 864 aaKnown RBP10.41□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L24Q0WX57 530 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 ME3Q16798 604 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 GTF3C2Q8WUA4 911 aaPredicted RBP10.41□□□□□ -0.74
COL12A1-208ENST00000486533 C12orf42Q96LP6 360 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 RBPJLQ9UBG7 517 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 SWAP70Q9UH65 585 aa10.41□□□□□ -0.74
COL12A1-208ENST00000486533 RANBP2P49792 3224 aaKnown RBP10.4□□□□□ -0.74
COL12A1-208ENST00000486533 CYP2D7A0A087X1C5 515 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L12C9JPN9 530 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 USP17L21D6R901 530 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 H3BQV1 296 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 HMGCRP04035 888 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 MAPK4P31152 587 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 GUCY1A2P33402 732 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 FGD1P98174 961 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 FOXD4L6Q3SYB3 417 aaPredicted RBP10.4□□□□□ -0.74
COL12A1-208ENST00000486533 FOXD4L3Q6VB84 417 aaPredicted RBP10.4□□□□□ -0.74
COL12A1-208ENST00000486533 TMEM179Q6ZVK1 233 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 SPATA32Q96LK8 384 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 DEFB118Q96PH6 123 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 NEK1Q96PY6 1258 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 NUDT12Q9BQG2 462 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 PUS7LQ9H0K6 701 aaKnown RBP10.4□□□□□ -0.74
COL12A1-208ENST00000486533 TNMDQ9H2S6 317 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 GJD2Q9UKL4 321 aa10.4□□□□□ -0.74
COL12A1-208ENST00000486533 PLXNB2O15031 1838 aa10.4□□□□□ -0.75
COL12A1-208ENST00000486533 FARP2O94887 1054 aaPredicted RBP10.39□□□□□ -0.75
COL12A1-208ENST00000486533 SGPL1O95470 568 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 TFRCP02786 760 aaKnown RBP10.39□□□□□ -0.75
COL12A1-208ENST00000486533 CYP2B6P20813 491 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 Q3C1V9 767 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 ADCK5Q3MIX3 580 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 MCMDC2Q4G0Z9 681 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 C12orf60Q5U649 245 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 WDR78Q5VTH9 848 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 CATSPERGQ6ZRH7 1159 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 CLEC10AQ8IUN9 316 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 KBTBD3Q8NAB2 608 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 SOCS4Q8WXH5 440 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 DPF3Q92784 378 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 GTF3C6Q969F1 213 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 ZNF396Q96N95 335 aaPredicted RBP10.39□□□□□ -0.75
COL12A1-208ENST00000486533 FUCA2Q9BTY2 467 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 PORCNQ9H237 461 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 RPAP3Q9H6T3 665 aaPredicted RBP10.39□□□□□ -0.75
COL12A1-208ENST00000486533 HELLSQ9NRZ9 838 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 TPCN1Q9ULQ1 816 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 A0A0D9SFI3 127 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 A0A1W2PRG0 241 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 SMIM22K7EJ46 135 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 AKR1B1P15121 316 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 CDK8P49336 464 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 CCNA1P78396 465 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 ICA1Q05084 483 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 POTEEQ6S8J3 1075 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 GPR142Q7Z601 462 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 RGS22Q8NE09 1264 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 MYRIPQ8NFW9 859 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 FAM227BQ96M60 508 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 TANGO6Q9C0B7 1094 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.39□□□□□ -0.75
COL12A1-208ENST00000486533 ARHGEF10LQ9HCE6 1279 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 PAK6Q9NQU5 681 aaPredicted RBP10.39□□□□□ -0.75
COL12A1-208ENST00000486533 SPTLC3Q9NUV7 552 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 RABGAP1Q9Y3P9 1069 aa10.39□□□□□ -0.75
COL12A1-208ENST00000486533 NEMFO60524 1076 aa10.38□□□□□ -0.75
COL12A1-208ENST00000486533 LARGE1O95461 756 aa10.38□□□□□ -0.75
COL12A1-208ENST00000486533 ATP2B2Q01814 1243 aa10.38□□□□□ -0.75
COL12A1-208ENST00000486533 TRIM32Q13049 653 aa10.38□□□□□ -0.75
COL12A1-208ENST00000486533 NOLC1Q14978 699 aaKnown RBP eCLIP10.38□□□□□ -0.75
COL12A1-208ENST00000486533 CTR9Q6PD62 1173 aa10.38□□□□□ -0.75
COL12A1-208ENST00000486533 C16orf86Q6ZW13 317 aa10.38□□□□□ -0.75
COL12A1-208ENST00000486533 PLEKHH3Q7Z736 793 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms