RNA–Protein interactions for RNA: ENST00000485870.1

COL1A1-206, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 403 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-206ENST00000485870 LHX8Q68G74 356 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 BTNL9Q6UXG8 535 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 KIAA1211Q6ZU35 1233 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 CYB5R4Q7L1T6 521 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 ANKRD35Q8N283 1001 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 ANKLE1Q8NAG6 615 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 MAP4K1Q92918 833 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 PAWRQ96IZ0 340 aaKnown RBP21.61■■□□□ 1.05
COL1A1-206ENST00000485870 RNF146Q9NTX7 359 aa21.61■■□□□ 1.05
COL1A1-206ENST00000485870 RBM8AQ9Y5S9 174 aaKnown RBP21.61■■□□□ 1.05
COL1A1-206ENST00000485870 FRMPD3Q5JV73 1810 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 CEP290O15078 2479 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 GOLGA8HP0CJ92 632 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 SNHG28P0DPA3 235 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 ALAS1P13196 640 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 TAL1P17542 331 aaPredicted RBP21.6■■□□□ 1.05
COL1A1-206ENST00000485870 ANKS1AQ92625 1134 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 HTATIP2Q9BUP3 242 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 ACAD9Q9H845 621 aa21.6■■□□□ 1.05
COL1A1-206ENST00000485870 DDX20Q9UHI6 824 aaKnown RBP21.6■■□□□ 1.05
COL1A1-206ENST00000485870 DIS3Q9Y2L1 958 aaKnown RBP21.6■■□□□ 1.05
COL1A1-206ENST00000485870 E7EWF7 191 aa21.59■■□□□ 1.05
COL1A1-206ENST00000485870 DPF3Q92784 378 aa21.59■■□□□ 1.05
COL1A1-206ENST00000485870 TRERF1Q96PN7 1200 aa21.59■■□□□ 1.05
COL1A1-206ENST00000485870 TINF2Q9BSI4 451 aa21.59■■□□□ 1.05
COL1A1-206ENST00000485870 LSG1Q9H089 658 aaKnown RBP21.59■■□□□ 1.05
COL1A1-206ENST00000485870 RANBP17Q9H2T7 1088 aaKnown RBP21.59■■□□□ 1.05
COL1A1-206ENST00000485870 CCPG1Q9ULG6 757 aa21.59■■□□□ 1.05
COL1A1-206ENST00000485870 SMCHD1A6NHR9 2005 aa21.58■■□□□ 1.05
COL1A1-206ENST00000485870 DNAJC25-GNG10A0A024R161 153 aa21.58■■□□□ 1.05
COL1A1-206ENST00000485870 MNX1P50219 401 aaPredicted RBP21.58■■□□□ 1.05
COL1A1-206ENST00000485870 TKFCQ3LXA3 575 aa21.58■■□□□ 1.05
COL1A1-206ENST00000485870 IFIT1BQ5T764 474 aaKnown RBP21.58■■□□□ 1.05
COL1A1-206ENST00000485870 STOX1Q6ZVD7 989 aa21.58■■□□□ 1.05
COL1A1-206ENST00000485870 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.58■■□□□ 1.05
COL1A1-206ENST00000485870 NECAB2Q7Z6G3 386 aa21.58■■□□□ 1.05
COL1A1-206ENST00000485870 RALYLQ86SE5 291 aaKnown RBP21.58■■□□□ 1.05
COL1A1-206ENST00000485870 MSCO60682 206 aa21.57■■□□□ 1.04
COL1A1-206ENST00000485870 ICAM1P05362 532 aa21.57■■□□□ 1.04
COL1A1-206ENST00000485870 MUM1L1Q5H9M0 696 aa21.57■■□□□ 1.04
COL1A1-206ENST00000485870 GPATCH4Q5T3I0 446 aaKnown RBP21.57■■□□□ 1.04
COL1A1-206ENST00000485870 ANO1Q5XXA6 986 aa21.57■■□□□ 1.04
COL1A1-206ENST00000485870 NCOA7Q8NI08 942 aa21.57■■□□□ 1.04
COL1A1-206ENST00000485870 CPVLQ9H3G5 476 aa21.57■■□□□ 1.04
COL1A1-206ENST00000485870 ANO2Q9NQ90 1003 aa21.57■■□□□ 1.04
COL1A1-206ENST00000485870 SEC23AQ15436 765 aa21.56■■□□□ 1.04
COL1A1-206ENST00000485870 UBA5Q9GZZ9 404 aa21.56■■□□□ 1.04
COL1A1-206ENST00000485870 C11orf49Q9H6J7 331 aa21.56■■□□□ 1.04
COL1A1-206ENST00000485870 A1CFQ9NQ94 594 aaKnown RBP21.56■■□□□ 1.04
COL1A1-206ENST00000485870 SEPT4O43236 478 aa21.55■■□□□ 1.04
COL1A1-206ENST00000485870 CHST3Q7LGC8 479 aa21.55■■□□□ 1.04
COL1A1-206ENST00000485870 MCM3APO60318 1980 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 POTEB2H3BUK9 544 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 IFIT3O14879 490 aaKnown RBP21.54■■□□□ 1.04
COL1A1-206ENST00000485870 CDC45O75419 566 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 CENPBP07199 599 aaPredicted RBP21.54■■□□□ 1.04
COL1A1-206ENST00000485870 CNTN2Q02246 1040 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 ASPRV1Q53RT3 343 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 CASC1Q6TDU7 716 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 MSL3Q8N5Y2 521 aaKnown RBP21.54■■□□□ 1.04
COL1A1-206ENST00000485870 FGD4Q96M96 766 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 NRBP1Q9UHY1 535 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 CNPY2Q9Y2B0 182 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 PFASO15067 1338 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 SYNGAP1Q96PV0 1343 aa21.54■■□□□ 1.04
COL1A1-206ENST00000485870 ALPK3Q96L96 1907 aa21.53■■□□□ 1.04
COL1A1-206ENST00000485870 ERICH2A1L162 156 aa21.53■■□□□ 1.04
COL1A1-206ENST00000485870 PARP1P09874 1014 aaKnown RBP21.53■■□□□ 1.04
COL1A1-206ENST00000485870 NSMFQ6X4W1 530 aa21.53■■□□□ 1.04
COL1A1-206ENST00000485870 ZNF467Q7Z7K2 595 aaPredicted RBP21.53■■□□□ 1.04
COL1A1-206ENST00000485870 H0YGN5 161 aa21.52■■□□□ 1.04
COL1A1-206ENST00000485870 SLC27A2O14975 620 aa21.52■■□□□ 1.04
COL1A1-206ENST00000485870 SNAI1O95863 264 aaPredicted RBP21.52■■□□□ 1.04
COL1A1-206ENST00000485870 MYCNP04198 464 aaPredicted RBP21.52■■□□□ 1.04
COL1A1-206ENST00000485870 WTAPQ15007 396 aa21.52■■□□□ 1.04
COL1A1-206ENST00000485870 SART3Q15020 963 aaKnown RBP21.52■■□□□ 1.04
COL1A1-206ENST00000485870 MAMDC4Q6UXC1 1216 aa21.52■■□□□ 1.04
COL1A1-206ENST00000485870 MB21D2Q8IYB1 491 aaPredicted RBP21.52■■□□□ 1.04
COL1A1-206ENST00000485870 FAM133AQ8N9E0 248 aa21.52■■□□□ 1.04
COL1A1-206ENST00000485870 SENP2Q9HC62 589 aa21.52■■□□□ 1.04
COL1A1-206ENST00000485870 CYP39A1Q9NYL5 469 aa21.52■■□□□ 1.04
COL1A1-206ENST00000485870 ZHX1Q9UKY1 873 aaPredicted RBP21.52■■□□□ 1.04
COL1A1-206ENST00000485870 NFIBO00712 420 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 DHX16O60231 1041 aaKnown RBP21.51■■□□□ 1.03
COL1A1-206ENST00000485870 EVI5O60447 810 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 ZNF865P0CJ78 1059 aaPredicted RBP21.51■■□□□ 1.03
COL1A1-206ENST00000485870 ANTXR2P58335 489 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 CDC37Q16543 378 aaPredicted RBP21.51■■□□□ 1.03
COL1A1-206ENST00000485870 TMEM67Q5HYA8 995 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 GJC2Q5T442 439 aaPredicted RBP21.51■■□□□ 1.03
COL1A1-206ENST00000485870 CREB3L3Q68CJ9 461 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 ARMCX2Q7L311 632 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 ADGRF4Q8IZF3 695 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.51■■□□□ 1.03
COL1A1-206ENST00000485870 WDR19Q8NEZ3 1342 aa21.51■■□□□ 1.03
COL1A1-206ENST00000485870 SOWAHBA6NEL2 793 aa21.5■■□□□ 1.03
COL1A1-206ENST00000485870 COL6A1P12109 1028 aa21.5■■□□□ 1.03
COL1A1-206ENST00000485870 NECTIN1Q15223 517 aa21.5■■□□□ 1.03
COL1A1-206ENST00000485870 USH1GQ495M9 461 aa21.5■■□□□ 1.03
COL1A1-206ENST00000485870 STAG2Q8N3U4 1231 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms