RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	PDZD3	Q86UT5	571 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	ADGRF5	Q8IZF2	1346 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	TXLNB	Q8N3L3	684 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	KIRREL1	Q96J84	757 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	DIRC2	Q96SL1	478 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	PIK3R4	Q99570	1358 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	PITPNM2	Q9BZ72	1349 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	C14orf93	Q9H972	538 aa	Known RBP	5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	KRT82	Q9NSB4	513 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	USP25	Q9UHP3	1055 aa		5.61	□□□□□ -1.51
PTCD3-212	ENST00000477520	LAMC1	P11047	1609 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	DIP2A	Q14689	1571 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	SETBP1	Q9Y6X0	1596 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	NRXN1	Q9ULB1	1477 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	PIK3C2G	O75747	1445 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	PRAG1	Q86YV5	1406 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	VGLL3	A8MV65	326 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	NFIB	O00712	420 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	ATP8B1	O43520	1251 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	TUBB4A	P04350	444 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	LMOD3	Q0VAK6	560 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	TRDN	Q13061	729 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	ORC1	Q13415	861 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	WDR43	Q15061	677 aa	Known RBP eCLIP	5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	HSP90AB3P	Q58FF7	597 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	TMEM67	Q5HYA8	995 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	CYFIP1	Q7L576	1253 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	UBE3D	Q7Z6J8	389 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	STK35	Q8TDR2	534 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	SSU72	Q9NP77	194 aa	Known RBP	5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	SMC4	Q9NTJ3	1288 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	CTNNA3	Q9UI47	895 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	KNSTRN	Q9Y448	316 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	KIAA1210	Q9ULL0	1709 aa		5.6	□□□□□ -1.51
PTCD3-212	ENST00000477520	IQGAP1	P46940	1657 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	TMEM238L	A0A1B0GVL6	79 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	SMTNL1	A8MU46	457 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	IGF2BP3	O00425	579 aa	Known RBP eCLIP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	IGHD	P01880	384 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	GTF2A1	P52655	376 aa	Predicted RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	FKBP4	Q02790	459 aa	Known RBP eCLIP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	ZNF211	Q13398	564 aa	Predicted RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	SF3B2	Q13435	895 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	BMS1	Q14692	1282 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	ZC3H12A	Q5D1E8	599 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	C20orf194	Q5TEA3	1177 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	ICE2	Q659A1	982 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	PRPF40B	Q6NWY9	871 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	FBXO15	Q8NCQ5	510 aa	Predicted RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	C20orf173	Q96LM9	149 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	NSUN3	Q9H649	340 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	PANK3	Q9H999	370 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	CARS2	Q9HA77	564 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	CD320	Q9NPF0	282 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	RAI14	Q9P0K7	980 aa		5.59	□□□□□ -1.51
PTCD3-212	ENST00000477520	ALK	Q9UM73	1620 aa		5.59	□□□□□ -1.52
PTCD3-212	ENST00000477520	STRC	Q7RTU9	1775 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	TMEM88B	A6NKF7	163 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	KIF2A	O00139	706 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	GUCY2C	P25092	1073 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	CYP2C19	P33261	490 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	TPM4	P67936	248 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	HDAC1	Q13547	482 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	DHX8	Q14562	1220 aa	Known RBP	5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	KRTAP5-3	Q6L8H2	238 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	PHLDB3	Q6NSJ2	640 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	CCDC91	Q7Z6B0	441 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	RNF214	Q8ND24	703 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	ZNF397	Q8NF99	534 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	KCNB2	Q92953	911 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	CARD11	Q9BXL7	1154 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	TSPY26P	Q9H489	355 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	LMBRD1	Q9NUN5	540 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	GTF2IRD1	Q9UHL9	959 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	FEZ2	Q9UHY8	353 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	JAG2	Q9Y219	1238 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	CEP83	Q9Y592	693 aa		5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	5.58	□□□□□ -1.52
PTCD3-212	ENST00000477520	ADAMTS13	Q76LX8	1427 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	GPRASP1	Q5JY77	1395 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	ANKRD36B	Q8N2N9	1353 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	TRPM1	Q7Z4N2	1603 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	EOMES	O95936	686 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	ABL1	P00519	1130 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	CCDC172	P0C7W6	258 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	KCNA6	P17658	529 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	NTF4	P34130	210 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	MCM2	P49736	904 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	CTSW	P56202	376 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	ERVK-24	P63145	666 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	SET	Q01105	290 aa	Predicted RBP	5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	SATB1	Q01826	763 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	KCNA10	Q16322	511 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	ATG14	Q6ZNE5	492 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	KIF18A	Q8NI77	898 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	KIAA1524	Q8TCG1	905 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	DEF6	Q9H4E7	631 aa		5.57	□□□□□ -1.52

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