RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 SF3B6Q9Y3B4 125 aaKnown RBP5.51□□□□□ -1.53
VPS13D-207ENST00000476169 A0A087X0B3 334 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 DHX15O43143 795 aaKnown RBP5.5□□□□□ -1.53
VPS13D-207ENST00000476169 SIGLEC6O43699 453 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 DLX3O60479 287 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 PDE8AO60658 829 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 ALDH1L1O75891 902 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 CBX7O95931 251 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 SNRPB2P08579 225 aaKnown RBP5.5□□□□□ -1.53
VPS13D-207ENST00000476169 FAM87AP0C7U9 286 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 STAT3P40763 770 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 AMPD2Q01433 879 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 PPP2R5AQ15172 486 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 SFRP5Q5T4F7 317 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 CNNM4Q6P4Q7 775 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 TMC3Q7Z5M5 1100 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 DTWD2Q8NBA8 298 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 KCTD13Q8WZ19 329 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 CCDC140Q96MF4 163 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 ASCC2Q9H1I8 757 aaPredicted RBP5.5□□□□□ -1.53
VPS13D-207ENST00000476169 CHST7Q9NS84 486 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 NDOR1Q9UHB4 597 aa5.5□□□□□ -1.53
VPS13D-207ENST00000476169 CNTNAP4Q9C0A0 1308 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 RBAK-RBAKDNI3L0D1 243 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 MEIS1O00470 390 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 KIF3BO15066 747 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 PRAMEF1O95521 474 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 KRT18P05783 430 aaKnown RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 C6orf222P0C671 652 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 LORP23490 312 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 HOXC12P31275 282 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 KIR3DL1P43629 444 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 GFRA1P56159 465 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 GABREP78334 506 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 NMIQ13287 307 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 TTF1Q15361 905 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 SF1Q15637 639 aaKnown RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 CCSAPQ6IQ19 270 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 GPAT2Q6NUI2 795 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 APBB1IPQ7Z5R6 666 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 ALYREFQ86V81 257 aaKnown RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 CLEC10AQ8IUN9 316 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 NKX2-4Q9H2Z4 354 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 INTS7Q9NVH2 962 aaKnown RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 GTF2IRD1Q9UHL9 959 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 MAPRE3Q9UPY8 281 aa5.49□□□□□ -1.53
VPS13D-207ENST00000476169 GPR55Q9Y2T6 319 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-207ENST00000476169 BLACEA4D250 179 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 GSG1L2A8MUP6 293 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 H0Y8X5 98 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 CAND2O75155 1236 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 VAMP4O75379 141 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 ATF3P18847 181 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 ITIH2P19823 946 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 SDSP20132 328 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 ECI1P42126 302 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 GUCY2FP51841 1108 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 EPHB1P54762 984 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 MAP4K2Q12851 820 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 SAFB2Q14151 953 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS13D-207ENST00000476169 DPY19L1Q2PZI1 675 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 MAP9Q49MG5 647 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 TRIM61Q5EBN2 209 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 CWF19L1Q69YN2 538 aaKnown RBP5.48□□□□□ -1.53
VPS13D-207ENST00000476169 BRAPQ7Z569 592 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 LRRTM3Q86VH5 581 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 TMEM145Q8NBT3 493 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 Q96M66 194 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 TBC1D32Q96NH3 1257 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 SMAD5Q99717 465 aaKnown RBP5.48□□□□□ -1.53
VPS13D-207ENST00000476169 TARS2Q9BW92 718 aaKnown RBP5.48□□□□□ -1.53
VPS13D-207ENST00000476169 SLC52A2Q9HAB3 445 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 CYP26B1Q9NR63 512 aa5.48□□□□□ -1.53
VPS13D-207ENST00000476169 KCNQ2O43526 872 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 TSPAN6O43657 245 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 EFCAB14O75071 495 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 DNAJC8O75937 253 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-207ENST00000476169 RASGRP1O95267 797 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 CPP00450 1065 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 GSNP06396 782 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 PMLP29590 882 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 GNALP38405 381 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 POU4F1Q01851 419 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 HDAC1Q13547 482 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-207ENST00000476169 UBE4AQ14139 1066 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 BRD3Q15059 726 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 CLEC16AQ2KHT3 1053 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 PRSS53Q2L4Q9 553 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 TSHZ1Q6ZSZ6 1077 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 USP53Q70EK8 1073 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 FAM214BQ7L5A3 538 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 RNF180Q86T96 592 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 SLC7A14Q8TBB6 771 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 PTPRN2Q92932 1015 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 RELTQ969Z4 430 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 MPHOSPH6Q99547 160 aaKnown RBP5.47□□□□□ -1.53
VPS13D-207ENST00000476169 FAM83CQ9BQN1 747 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 TRIM39Q9HCM9 518 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 MINPP1Q9UNW1 487 aa5.47□□□□□ -1.53
VPS13D-207ENST00000476169 COMMD10Q9Y6G5 202 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms