RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 CHIC1Q5VXU3 224 aa16.07■□□□□ 0.16
VPS13D-207ENST00000476169 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
VPS13D-207ENST00000476169 PHF23Q9BUL5 403 aaPredicted RBP14.17□□□□□ -0.14
VPS13D-207ENST00000476169 SENP3Q9H4L4 574 aaPredicted RBP13.53□□□□□ -0.24
VPS13D-207ENST00000476169 PLPPR3Q6T4P5 718 aa13.26□□□□□ -0.29
VPS13D-207ENST00000476169 FOXD1Q16676 465 aa12.49□□□□□ -0.41
VPS13D-207ENST00000476169 ADRA2BP18089 450 aa12.4□□□□□ -0.42
VPS13D-207ENST00000476169 PPP6R1Q9UPN7 881 aa12.35□□□□□ -0.43
VPS13D-207ENST00000476169 KCNA4P22459 653 aa11.97□□□□□ -0.49
VPS13D-207ENST00000476169 PIAS4Q8N2W9 510 aaPredicted RBP11.91□□□□□ -0.5
VPS13D-207ENST00000476169 PPP4R3CPQ6ZMV5 832 aa11.74□□□□□ -0.53
VPS13D-207ENST00000476169 EHMT2Q96KQ7 1210 aa11.69□□□□□ -0.54
VPS13D-207ENST00000476169 NCBP3Q53F19 620 aaKnown RBP11.57□□□□□ -0.56
VPS13D-207ENST00000476169 SLC4A1APQ9BWU0 796 aaKnown RBP11.5□□□□□ -0.57
VPS13D-207ENST00000476169 NPM3O75607 178 aaKnown RBP11.38□□□□□ -0.59
VPS13D-207ENST00000476169 MSH5O43196 834 aa11.36□□□□□ -0.59
VPS13D-207ENST00000476169 SCAF1Q9H7N4 1312 aaKnown RBP11.35□□□□□ -0.59
VPS13D-207ENST00000476169 CNKSR2Q8WXI2 1034 aa11.31□□□□□ -0.6
VPS13D-207ENST00000476169 CSRNP3Q8WYN3 585 aa11.31□□□□□ -0.6
VPS13D-207ENST00000476169 MAPK8IP2Q13387 824 aaPredicted RBP11.11□□□□□ -0.63
VPS13D-207ENST00000476169 ZBTB22O15209 634 aa11.02□□□□□ -0.65
VPS13D-207ENST00000476169 RNF216Q9NWF9 866 aaPredicted RBP10.97□□□□□ -0.65
VPS13D-207ENST00000476169 DNAJC5BQ9UF47 199 aa10.95□□□□□ -0.66
VPS13D-207ENST00000476169 FOXD4L1Q9NU39 408 aa10.9□□□□□ -0.66
VPS13D-207ENST00000476169 DMRT2Q9Y5R5 561 aa10.86□□□□□ -0.67
VPS13D-207ENST00000476169 HOXD11P31277 338 aaPredicted RBP10.8□□□□□ -0.68
VPS13D-207ENST00000476169 SLC4A2P04920 1241 aa10.63□□□□□ -0.71
VPS13D-207ENST00000476169 MYCNP04198 464 aaPredicted RBP10.52□□□□□ -0.73
VPS13D-207ENST00000476169 ATXN8OSP0DMR3 200 aa10.46□□□□□ -0.73
VPS13D-207ENST00000476169 DCAF8L1A6NGE4 600 aa10.42□□□□□ -0.74
VPS13D-207ENST00000476169 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.34□□□□□ -0.755e-6■□□□□ 10.3
VPS13D-207ENST00000476169 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.23□□□□□ -0.77
VPS13D-207ENST00000476169 FKBP8Q14318 412 aa10.23□□□□□ -0.77
VPS13D-207ENST00000476169 HNRNPUL2Q1KMD3 747 aaKnown RBP10.23□□□□□ -0.77
VPS13D-207ENST00000476169 SAMD1Q6SPF0 538 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-207ENST00000476169 ATF5Q9Y2D1 282 aaPredicted RBP10.19□□□□□ -0.78
VPS13D-207ENST00000476169 U3KPZ7 1027 aaPredicted RBP10.19□□□□□ -0.78
VPS13D-207ENST00000476169 AMER1Q5JTC6 1135 aaPredicted RBP10.1□□□□□ -0.79
VPS13D-207ENST00000476169 RTN4Q9NQC3 1192 aaKnown RBP10.08□□□□□ -0.8
VPS13D-207ENST00000476169 APLP2Q06481 763 aa10.03□□□□□ -0.8
VPS13D-207ENST00000476169 ZNF219Q9P2Y4 722 aaPredicted RBP10□□□□□ -0.81
VPS13D-207ENST00000476169 SLC24A1O60721 1099 aa9.85□□□□□ -0.83
VPS13D-207ENST00000476169 TRHP20396 242 aaPredicted RBP9.8□□□□□ -0.84
VPS13D-207ENST00000476169 SPDYE4A6NLX3 237 aa9.79□□□□□ -0.84
VPS13D-207ENST00000476169 SPINK5Q9NQ38 1064 aaPredicted RBP9.78□□□□□ -0.84
VPS13D-207ENST00000476169 FBLN2P98095 1184 aa9.77□□□□□ -0.85
VPS13D-207ENST00000476169 MKRN4PQ13434 485 aaPredicted RBP9.77□□□□□ -0.85
VPS13D-207ENST00000476169 RNF39Q9H2S5 420 aa9.77□□□□□ -0.85
VPS13D-207ENST00000476169 CAPN15O75808 1086 aa9.74□□□□□ -0.85
VPS13D-207ENST00000476169 FBXO3Q9UK99 471 aa9.74□□□□□ -0.85
VPS13D-207ENST00000476169 POLA2Q14181 598 aa9.72□□□□□ -0.85
VPS13D-207ENST00000476169 C1QBPQ07021 282 aaKnown RBP9.68□□□□□ -0.86
VPS13D-207ENST00000476169 POTEDQ86YR6 584 aa9.66□□□□□ -0.86
VPS13D-207ENST00000476169 PROM2Q8N271 834 aa9.65□□□□□ -0.86
VPS13D-207ENST00000476169 ZBTB12Q9Y330 459 aaPredicted RBP9.61□□□□□ -0.87
VPS13D-207ENST00000476169 ABCB7O75027 752 aa9.59□□□□□ -0.87
VPS13D-207ENST00000476169 VASPP50552 380 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-207ENST00000476169 IFNLR1Q8IU57 520 aaPredicted RBP9.48□□□□□ -0.89
VPS13D-207ENST00000476169 DSG3P32926 999 aa9.44□□□□□ -0.9
VPS13D-207ENST00000476169 ZNF692Q9BU19 519 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-207ENST00000476169 OSCARQ8IYS5 282 aa9.39□□□□□ -0.91
VPS13D-207ENST00000476169 SPDYE2BA6NHP3 402 aa9.38□□□□□ -0.91
VPS13D-207ENST00000476169 DCAF8L2P0C7V8 631 aa9.38□□□□□ -0.91
VPS13D-207ENST00000476169 SPDYE6P0CI01 402 aa9.38□□□□□ -0.91
VPS13D-207ENST00000476169 SPDYE2Q495Y8 402 aa9.38□□□□□ -0.91
VPS13D-207ENST00000476169 KLHL34Q8N239 644 aa9.35□□□□□ -0.91
VPS13D-207ENST00000476169 STAG3Q9UJ98 1225 aa9.35□□□□□ -0.91
VPS13D-207ENST00000476169 SSUH2Q9Y2M2 353 aa9.34□□□□□ -0.91
VPS13D-207ENST00000476169 PKD2Q13563 968 aa9.33□□□□□ -0.92
VPS13D-207ENST00000476169 SPOCK2Q92563 424 aa9.32□□□□□ -0.92
VPS13D-207ENST00000476169 PLCB2Q00722 1185 aa9.31□□□□□ -0.92
VPS13D-207ENST00000476169 PABPN1Q86U42 306 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS13D-207ENST00000476169 PLCD3Q8N3E9 789 aa9.29□□□□□ -0.92
VPS13D-207ENST00000476169 MIER1Q8N108 512 aa9.24□□□□□ -0.93
VPS13D-207ENST00000476169 ECM2O94769 699 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-207ENST00000476169 CACNB1Q02641 598 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-207ENST00000476169 HAP1P54257 671 aaPredicted RBP9.21□□□□□ -0.94
VPS13D-207ENST00000476169 PLEKHG5O94827 1062 aa9.17□□□□□ -0.94
VPS13D-207ENST00000476169 ZBTB47Q9UFB7 747 aaPredicted RBP9.15□□□□□ -0.94
VPS13D-207ENST00000476169 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-207ENST00000476169 BBXQ8WY36 941 aaPredicted RBP9.11□□□□□ -0.95
VPS13D-207ENST00000476169 CIZ1Q9ULV3 898 aaPredicted RBP9.11□□□□□ -0.95
VPS13D-207ENST00000476169 RGL2O15211 777 aa9.1□□□□□ -0.95
VPS13D-207ENST00000476169 NPM1P06748 294 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS13D-207ENST00000476169 PAXIP1Q6ZW49 1069 aaPredicted RBP9.05□□□□□ -0.96
VPS13D-207ENST00000476169 VSIG10Q8N0Z9 540 aa9.05□□□□□ -0.96
VPS13D-207ENST00000476169 CFAP44Q96MT7 982 aa9.03□□□□□ -0.96
VPS13D-207ENST00000476169 TRIM41Q8WV44 630 aa9.02□□□□□ -0.97
VPS13D-207ENST00000476169 SPDYE1Q8NFV5 336 aaPredicted RBP9.01□□□□□ -0.97
VPS13D-207ENST00000476169 RBM42Q9BTD8 480 aaKnown RBP9□□□□□ -0.97
VPS13D-207ENST00000476169 CHGAP10645 457 aaKnown RBP8.99□□□□□ -0.97
VPS13D-207ENST00000476169 GSE1Q14687 1217 aa8.98□□□□□ -0.97
VPS13D-207ENST00000476169 AKT1S1Q96B36 256 aa8.98□□□□□ -0.97
VPS13D-207ENST00000476169 BCANQ96GW7 911 aa8.98□□□□□ -0.97
VPS13D-207ENST00000476169 SPRYD3Q8NCJ5 442 aa8.97□□□□□ -0.97
VPS13D-207ENST00000476169 CLEC11AQ9Y240 323 aa8.95□□□□□ -0.98
VPS13D-207ENST00000476169 NUBP1P53384 320 aa8.94□□□□□ -0.98
VPS13D-207ENST00000476169 PRR29P0C7W0 189 aa8.93□□□□□ -0.98
VPS13D-207ENST00000476169 KDM2AQ9Y2K7 1162 aa8.93□□□□□ -0.98
VPS13D-207ENST00000476169 DCAF8Q5TAQ9 597 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms