RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 DNAJC25-GNG10A0A024R161 153 aa25.72■■□□□ 1.71
TTC28-204ENST00000468807 SOX1O00570 391 aaPredicted RBP25.72■■□□□ 1.71
TTC28-204ENST00000468807 SLC39A5Q6ZMH5 540 aa25.72■■□□□ 1.71
TTC28-204ENST00000468807 RNF180Q86T96 592 aa25.72■■□□□ 1.71
TTC28-204ENST00000468807 MSL3Q8N5Y2 521 aaKnown RBP25.72■■□□□ 1.71
TTC28-204ENST00000468807 AGBL1Q96MI9 1066 aa25.72■■□□□ 1.71
TTC28-204ENST00000468807 ACAD9Q9H845 621 aa25.72■■□□□ 1.71
TTC28-204ENST00000468807 DIAPH3Q9NSV4 1193 aa25.72■■□□□ 1.71
TTC28-204ENST00000468807 MCM3APO60318 1980 aa25.71■■□□□ 1.71
TTC28-204ENST00000468807 CWC27Q6UX04 472 aaKnown RBP25.71■■□□□ 1.71
TTC28-204ENST00000468807 LRCH3Q96II8 777 aa25.71■■□□□ 1.71
TTC28-204ENST00000468807 LBHD1Q9BQE6 289 aaPredicted RBP25.71■■□□□ 1.71
TTC28-204ENST00000468807 OSBPL3Q9H4L5 887 aa25.71■■□□□ 1.71
TTC28-204ENST00000468807 PRDM5Q9NQX1 630 aaPredicted RBP25.71■■□□□ 1.71
TTC28-204ENST00000468807 RNF146Q9NTX7 359 aa25.71■■□□□ 1.71
TTC28-204ENST00000468807 PRR12Q9ULL5 1215 aa25.71■■□□□ 1.71
TTC28-204ENST00000468807 ZMYM6O95789 1325 aa25.7■■□□□ 1.71
TTC28-204ENST00000468807 FGRP09769 529 aa25.7■■□□□ 1.7
TTC28-204ENST00000468807 ALAS1P13196 640 aa25.7■■□□□ 1.7
TTC28-204ENST00000468807 MFSD6Q6ZSS7 791 aa25.7■■□□□ 1.7
TTC28-204ENST00000468807 TDHQ8IZJ6 230 aa25.7■■□□□ 1.7
TTC28-204ENST00000468807 DCAF4Q8WV16 495 aa25.7■■□□□ 1.7
TTC28-204ENST00000468807 FAM184BQ9ULE4 1060 aa25.7■■□□□ 1.7
TTC28-204ENST00000468807 SNAI1O95863 264 aaPredicted RBP25.69■■□□□ 1.7
TTC28-204ENST00000468807 TRIM60Q495X7 471 aa25.69■■□□□ 1.7
TTC28-204ENST00000468807 MAMDC4Q6UXC1 1216 aa25.69■■□□□ 1.7
TTC28-204ENST00000468807 ZNF467Q7Z7K2 595 aaPredicted RBP25.69■■□□□ 1.7
TTC28-204ENST00000468807 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.69■■□□□ 1.7
TTC28-204ENST00000468807 ZNF536O15090 1300 aa25.68■■□□□ 1.7
TTC28-204ENST00000468807 FRMPD2Q68DX3 1309 aaPredicted RBP25.68■■□□□ 1.7
TTC28-204ENST00000468807 POTEB2H3BUK9 544 aa25.68■■□□□ 1.7
TTC28-204ENST00000468807 PLA2G6O60733 806 aa25.68■■□□□ 1.7
TTC28-204ENST00000468807 TOP1P11387 765 aaKnown RBP25.68■■□□□ 1.7
TTC28-204ENST00000468807 CNTN2Q02246 1040 aa25.68■■□□□ 1.7
TTC28-204ENST00000468807 AKNAD1Q5T1N1 836 aa25.68■■□□□ 1.7
TTC28-204ENST00000468807 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.68■■□□□ 1.7
TTC28-204ENST00000468807 TRERF1Q96PN7 1200 aa25.68■■□□□ 1.7
TTC28-204ENST00000468807 TMEM47Q9BQJ4 181 aa25.68■■□□□ 1.7
TTC28-204ENST00000468807 SLC16A2P36021 539 aa25.67■■□□□ 1.7
TTC28-204ENST00000468807 NOVP48745 357 aa25.67■■□□□ 1.7
TTC28-204ENST00000468807 ACVR2BQ13705 512 aa25.67■■□□□ 1.7
TTC28-204ENST00000468807 ARMCX2Q7L311 632 aa25.67■■□□□ 1.7
TTC28-204ENST00000468807 TBC1D10CQ8IV04 446 aa25.67■■□□□ 1.7
TTC28-204ENST00000468807 RNF41Q9H4P4 317 aaPredicted RBP25.67■■□□□ 1.7
TTC28-204ENST00000468807 GPCPD1Q9NPB8 672 aa25.67■■□□□ 1.7
TTC28-204ENST00000468807 A1CFQ9NQ94 594 aaKnown RBP25.67■■□□□ 1.7
TTC28-204ENST00000468807 PHF24Q9UPV7 400 aa25.67■■□□□ 1.7
TTC28-204ENST00000468807 HIP1O00291 1037 aa25.66■■□□□ 1.7
TTC28-204ENST00000468807 ZNF213O14771 459 aa25.66■■□□□ 1.7
TTC28-204ENST00000468807 IRX6P78412 446 aaPredicted RBP25.66■■□□□ 1.7
TTC28-204ENST00000468807 TKFCQ3LXA3 575 aa25.66■■□□□ 1.7
TTC28-204ENST00000468807 TTBK2Q6IQ55 1244 aa25.66■■□□□ 1.7
TTC28-204ENST00000468807 CCDC144CPQ8IYA2 1237 aa25.66■■□□□ 1.7
TTC28-204ENST00000468807 FGD4Q96M96 766 aa25.66■■□□□ 1.7
TTC28-204ENST00000468807 CCPG1Q9ULG6 757 aa25.66■■□□□ 1.7
TTC28-204ENST00000468807 SYNRGQ9UMZ2 1314 aa25.65■■□□□ 1.7
TTC28-204ENST00000468807 PCP11498 1178 aaKnown RBP25.65■■□□□ 1.7
TTC28-204ENST00000468807 ABHD16BQ9H3Z7 469 aa25.65■■□□□ 1.7
TTC28-204ENST00000468807 TCP11L1Q9NUJ3 509 aa25.65■■□□□ 1.7
TTC28-204ENST00000468807 A0A1W2PQ45 241 aaPredicted RBP25.64■■□□□ 1.7
TTC28-204ENST00000468807 A0A1W2PQY0 241 aa25.64■■□□□ 1.7
TTC28-204ENST00000468807 ADAMTS4O75173 837 aa25.64■■□□□ 1.7
TTC28-204ENST00000468807 SNX17Q15036 470 aa25.64■■□□□ 1.7
TTC28-204ENST00000468807 MUM1L1Q5H9M0 696 aa25.64■■□□□ 1.7
TTC28-204ENST00000468807 ESR2Q92731 530 aa25.64■■□□□ 1.7
TTC28-204ENST00000468807 ZKSCAN3Q9BRR0 538 aa25.64■■□□□ 1.7
TTC28-204ENST00000468807 LAMA2P24043 3122 aaKnown RBP25.64■■□□□ 1.69
TTC28-204ENST00000468807 NEDD4P46934 1319 aa25.63■■□□□ 1.69
TTC28-204ENST00000468807 CCDC144BQ3MJ40 725 aa25.63■■□□□ 1.69
TTC28-204ENST00000468807 SYDE2Q5VT97 1194 aa25.63■■□□□ 1.69
TTC28-204ENST00000468807 NSMFQ6X4W1 530 aa25.63■■□□□ 1.69
TTC28-204ENST00000468807 FAM133AQ8N9E0 248 aa25.63■■□□□ 1.69
TTC28-204ENST00000468807 LAMA4Q16363 1823 aa25.63■■□□□ 1.69
TTC28-204ENST00000468807 DUSP11O75319 330 aaKnown RBP25.62■■□□□ 1.69
TTC28-204ENST00000468807 ICAM1P05362 532 aa25.62■■□□□ 1.69
TTC28-204ENST00000468807 C6orf222P0C671 652 aaPredicted RBP25.62■■□□□ 1.69
TTC28-204ENST00000468807 ACLYP53396 1101 aa25.62■■□□□ 1.69
TTC28-204ENST00000468807 TLE2Q04725 743 aa25.62■■□□□ 1.69
TTC28-204ENST00000468807 LRIT3Q3SXY7 679 aa25.62■■□□□ 1.69
TTC28-204ENST00000468807 RANBP17Q9H2T7 1088 aaKnown RBP25.62■■□□□ 1.69
TTC28-204ENST00000468807 SPC25Q9HBM1 224 aa25.62■■□□□ 1.69
TTC28-204ENST00000468807 LTBP2Q14767 1821 aa25.62■■□□□ 1.69
TTC28-204ENST00000468807 SOWAHBA6NEL2 793 aa25.61■■□□□ 1.69
TTC28-204ENST00000468807 PQBP1O60828 265 aaKnown RBP25.61■■□□□ 1.69
TTC28-204ENST00000468807 PDHBP11177 359 aa25.61■■□□□ 1.69
TTC28-204ENST00000468807 KCNA10Q16322 511 aa25.61■■□□□ 1.69
TTC28-204ENST00000468807 C1orf53Q5VUE5 145 aa25.61■■□□□ 1.69
TTC28-204ENST00000468807 NOL8Q76FK4 1167 aaKnown RBP25.61■■□□□ 1.69
TTC28-204ENST00000468807 TTC14Q96N46 770 aa25.61■■□□□ 1.69
TTC28-204ENST00000468807 TSEN34Q9BSV6 310 aaKnown RBP25.61■■□□□ 1.69
TTC28-204ENST00000468807 STARD7Q9NQZ5 370 aa25.61■■□□□ 1.69
TTC28-204ENST00000468807 PDLIM7Q9NR12 457 aa25.61■■□□□ 1.69
TTC28-204ENST00000468807 MYADML2A6NDP7 307 aa25.6■■□□□ 1.69
TTC28-204ENST00000468807 ASB14A6NK59 587 aa25.6■■□□□ 1.69
TTC28-204ENST00000468807 ADCY6O43306 1168 aa25.6■■□□□ 1.69
TTC28-204ENST00000468807 IRX5P78411 483 aaPredicted RBP25.6■■□□□ 1.69
TTC28-204ENST00000468807 SH3RF1Q7Z6J0 888 aa25.6■■□□□ 1.69
TTC28-204ENST00000468807 NUP133Q8WUM0 1156 aa25.6■■□□□ 1.69
TTC28-204ENST00000468807 CYP39A1Q9NYL5 469 aa25.6■■□□□ 1.69
TTC28-204ENST00000468807 IMMTQ16891 758 aaKnown RBP25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms