RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MMP19Q99542 508 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 MAF1Q9H063 256 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 ACAD9Q9H845 621 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 LY9Q9HBG7 655 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 DIS3Q9Y2L1 958 aaKnown RBP13.85□□□□□ -0.19
VPS52-213ENST00000461743 ELNP15502 786 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 CYP2B6P20813 491 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 GRM4Q14833 912 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 MAP3K21Q5TCX8 1036 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 DPP9Q86TI2 863 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 SGMS1Q86VZ5 419 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 CPXCR1Q8N123 301 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 TRIB2Q92519 343 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 TMEM106CQ9BVX2 250 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 RAVER2Q9HCJ3 691 aaKnown RBP13.84□□□□□ -0.19
VPS52-213ENST00000461743 GPCPD1Q9NPB8 672 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 BIN2Q9UBW5 565 aaPredicted RBP13.84□□□□□ -0.19
VPS52-213ENST00000461743 PFASO15067 1338 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 KIAA1217Q5T5P2 1943 aa13.84□□□□□ -0.19
VPS52-213ENST00000461743 PDE4DIPQ5VU43 2346 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 PALM3A6NDB9 673 aaPredicted RBP13.83□□□□□ -0.2
VPS52-213ENST00000461743 CALM1P0DP23 149 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 CALM2P0DP24 149 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 CALM3P0DP25 149 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 KIF5BP33176 963 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 RCAN1P53805 252 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 TROAPQ12815 778 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 MFSD14CQ5VZR4 134 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 TTBK2Q6IQ55 1244 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 DHX32Q7L7V1 743 aaKnown RBP13.83□□□□□ -0.2
VPS52-213ENST00000461743 RASEFQ8IZ41 740 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 MSL3Q8N5Y2 521 aaKnown RBP13.83□□□□□ -0.2
VPS52-213ENST00000461743 RNF146Q9NTX7 359 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 MAD2L2Q9UI95 211 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 CCPG1Q9ULG6 757 aa13.83□□□□□ -0.2
VPS52-213ENST00000461743 TNRC18O15417 2968 aaPredicted RBP13.83□□□□□ -0.2
VPS52-213ENST00000461743 CCDC69A6NI79 296 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 IGHA2P01877 340 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 PSMA5P28066 241 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 SLC16A2P36021 539 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 CHST3Q7LGC8 479 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 ZNF467Q7Z7K2 595 aaPredicted RBP13.82□□□□□ -0.2
VPS52-213ENST00000461743 ZNF654Q8IZM8 581 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 FBXL16Q8N461 479 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 CTCFLQ8NI51 663 aaPredicted RBP13.82□□□□□ -0.2
VPS52-213ENST00000461743 USP26Q9BXU7 913 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 PAK6Q9NQU5 681 aaPredicted RBP13.82□□□□□ -0.2
VPS52-213ENST00000461743 NRBP1Q9UHY1 535 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 RIPK3Q9Y572 518 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 SNX14Q9Y5W7 946 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 RPTORQ8N122 1335 aa13.82□□□□□ -0.2
VPS52-213ENST00000461743 DNAJC25-GNG10A0A024R161 153 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 KLRF2D3W0D1 207 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 GJB1P08034 283 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 GOLGA8HP0CJ92 632 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 ALAS1P13196 640 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 CCL5P13501 91 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 PRKAR2AP13861 404 aaKnown RBP13.81□□□□□ -0.2
VPS52-213ENST00000461743 RGS19P49795 217 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 EXOSC10Q01780 885 aaKnown RBP13.81□□□□□ -0.2
VPS52-213ENST00000461743 TRAF1Q13077 416 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 CDC37Q16543 378 aaPredicted RBP13.81□□□□□ -0.2
VPS52-213ENST00000461743 CCDC174Q6PII3 467 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 ANKRD35Q8N283 1001 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 CHMP4CQ96CF2 233 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 MAML3Q96JK9 1138 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 AGBL1Q96MI9 1066 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 TRERF1Q96PN7 1200 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 LZTS2Q9BRK4 669 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 HMX1Q9NP08 348 aaPredicted RBP13.81□□□□□ -0.2
VPS52-213ENST00000461743 ABCB11O95342 1321 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 NID2Q14112 1375 aa13.81□□□□□ -0.2
VPS52-213ENST00000461743 LOC102724159A0A0B4J2E5 919 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 COBLO75128 1261 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 CAPN15O75808 1086 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 SMARCA1P28370 1054 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 GNAQP50148 359 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 SOX10P56693 466 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 ANAPC15P60006 121 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 PWP2Q15269 919 aaKnown RBP13.8□□□□□ -0.2
VPS52-213ENST00000461743 MTFR1Q15390 333 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 ZNF792Q3KQV3 632 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 ADCK5Q3MIX3 580 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 BLOC1S2Q6QNY1 142 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 NFXL1Q6ZNB6 911 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 ADGRF4Q8IZF3 695 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 NPLOC4Q8TAT6 608 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 MTMR8Q96EF0 704 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 DDX11Q96FC9 970 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 JAKMIP1Q96N16 626 aaKnown RBP13.8□□□□□ -0.2
VPS52-213ENST00000461743 SPZ1Q9BXG8 430 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.8□□□□□ -0.2
VPS52-213ENST00000461743 RNF208Q9H0X6 261 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 SENP2Q9HC62 589 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 A1CFQ9NQ94 594 aaKnown RBP13.8□□□□□ -0.2
VPS52-213ENST00000461743 HOMER2Q9NSB8 354 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 SLC12A7Q9Y666 1083 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 SYNGAP1Q96PV0 1343 aa13.8□□□□□ -0.2
VPS52-213ENST00000461743 MKI67P46013 3256 aaKnown RBP13.8□□□□□ -0.2
VPS52-213ENST00000461743 DHX16O60231 1041 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms