RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 RPGRQ92834 1020 aaKnown RBP9.94□□□□□ -0.82
HDAC3-202ENST00000459727 SHISA4Q96DD7 197 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 CALML4Q96GE6 196 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 MED15Q96RN5 788 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 NUP88Q99567 741 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-202ENST00000459727 NAPGQ99747 312 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-202ENST00000459727 TSGA10Q9BZW7 698 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 GLT8D2Q9H1C3 349 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 HAUS4Q9H6D7 363 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 EXOC1Q9NV70 894 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 KBTBD4Q9NVX7 518 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 TFCP2L1Q9NZI6 479 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 MAD2L2Q9UI95 211 aa9.94□□□□□ -0.82
HDAC3-202ENST00000459727 THSD7AQ9UPZ6 1657 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 GPR75-ASB3A0A0A6YYF3 556 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 KCNQ2O43526 872 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 BBOX1O75936 387 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 ZRANB2O95218 330 aaKnown RBP eCLIP9.93□□□□□ -0.82
HDAC3-202ENST00000459727 PNMA6AP0CW24 399 aaPredicted RBP9.93□□□□□ -0.82
HDAC3-202ENST00000459727 CASP14P31944 242 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 NAPAP54920 295 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 STX17P56962 302 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 CHMP4BP1P59074 171 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 CDK17Q00537 523 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 UBXN1Q04323 297 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 CKAP4Q07065 602 aaKnown RBP9.93□□□□□ -0.82
HDAC3-202ENST00000459727 SEPT2Q15019 361 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 TRAPPC3LQ5T215 181 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 MCTP2Q6DN12 878 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 HEATR3Q7Z4Q2 680 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 NEK8Q86SG6 692 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 CCDC170Q8IYT3 715 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 GIMAP8Q8ND71 665 aaPredicted RBP9.93□□□□□ -0.82
HDAC3-202ENST00000459727 RBM17Q96I25 401 aaKnown RBP9.93□□□□□ -0.82
HDAC3-202ENST00000459727 TRIM47Q96LD4 638 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 C7orf25Q9BPX7 421 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 PCDHA6Q9UN73 950 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 LUC7L2Q9Y383 392 aaKnown RBP9.93□□□□□ -0.82
HDAC3-202ENST00000459727 PCDHA8Q9Y5H6 950 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 COL4A1P02462 1669 aa9.93□□□□□ -0.82
HDAC3-202ENST00000459727 BAZ2AQ9UIF9 1905 aaKnown RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 GAKO14976 1311 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 SPATA31A6Q5VVP1 1343 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 A0A1W2PQJ5 194 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 SOWAHDA6NJG2 315 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 NUTM2BA6NNL0 878 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 NUTM2EB1AL46 878 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 KLRF2D3W0D1 207 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 USP17L8P0C7I0 530 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 IL1R1P14778 569 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 GCFC2P16383 781 aaKnown RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 CCNE1P24864 410 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 TM4SF1P30408 202 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 KRT9P35527 623 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 NOVP48745 357 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 NAA30Q147X3 362 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 FAM98CQ17RN3 349 aaKnown RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 KIF4BQ2VIQ3 1234 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 MAP9Q49MG5 647 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 FKBP15Q5T1M5 1219 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 ZNF771Q7L3S4 317 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 CABP7Q86V35 215 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 TEX2Q8IWB9 1127 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 REXO1Q8N1G1 1221 aaKnown RBP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 MB21D1Q8N884 522 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 RUBCNQ92622 972 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 PKNOX2Q96KN3 472 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 WDR24Q96S15 920 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 EYA3Q99504 573 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 DNAJC7Q99615 494 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 TMEM47Q9BQJ4 181 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 IL17RBQ9NRM6 502 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 PODXL2Q9NZ53 605 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.92□□□□□ -0.82
HDAC3-202ENST00000459727 SWAP70Q9UH65 585 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 GGA1Q9UJY5 639 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 CAPN11Q9UMQ6 739 aa9.92□□□□□ -0.82
HDAC3-202ENST00000459727 BTAF1O14981 1849 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 LY75O60449 1722 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 DDX60LQ5H9U9 1706 aaKnown RBP9.91□□□□□ -0.82
HDAC3-202ENST00000459727 PVALEFA0A1B0GWK0 134 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 hCG_1642624A0A1W2PR95 340 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 CTAGE15A4D2H0 777 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 TEX33O43247 280 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 KRT86O43790 486 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 NMT2O60551 498 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 CTAGE8P0CG41 777 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 SRGNP10124 158 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 CYP2D6P10635 497 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 RASA1P20936 1047 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 KLRK1P26718 216 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 CCT6AP40227 531 aaKnown RBP9.91□□□□□ -0.82
HDAC3-202ENST00000459727 PRCPP42785 496 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 PSMD2Q13200 908 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 TERF2Q15554 542 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 CRY2Q49AN0 593 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 HSP90AA4PQ58FG1 418 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 ZNF772Q68DY9 489 aaPredicted RBP9.91□□□□□ -0.82
HDAC3-202ENST00000459727 CCDC70Q6NSX1 233 aa9.91□□□□□ -0.82
HDAC3-202ENST00000459727 CC2D1AQ6P1N0 951 aaPredicted RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms