RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 HMMRO75330 724 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 TSPAN15O95858 294 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 CST3P01034 146 aaPredicted RBP6.57□□□□□ -1.36
VPS41-209ENST00000457055 CYP7A1P22680 504 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 EIF4BP23588 611 aaKnown RBP6.57□□□□□ -1.36
VPS41-209ENST00000457055 SEPT6Q14141 434 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 CCDC85BQ15834 202 aaPredicted RBP6.57□□□□□ -1.36
VPS41-209ENST00000457055 LCE4AQ5TA78 99 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 FMNL3Q8IVF7 1028 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 CCDC120Q96HB5 630 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 TOX2Q96NM4 488 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 ALPK1Q96QP1 1244 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 PAIP2Q9BPZ3 127 aaKnown RBP6.57□□□□□ -1.36
VPS41-209ENST00000457055 YY1AP1Q9H869 796 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 IFT122Q9HBG6 1241 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 PLB1Q6P1J6 1458 aa6.57□□□□□ -1.36
VPS41-209ENST00000457055 TEX14Q8IWB6 1497 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 TIMM44O43615 452 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 GNA15P30679 374 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 TDO2P48775 406 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 RPS26P62854 115 aaKnown RBP6.56□□□□□ -1.36
VPS41-209ENST00000457055 TCEAL1Q15170 157 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 SYDE1Q6ZW31 735 aaPredicted RBP6.56□□□□□ -1.36
VPS41-209ENST00000457055 NT5DC4Q86YG4 428 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 UBE2FQ969M7 185 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 COX4I2Q96KJ9 171 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 ZHX3Q9H4I2 956 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 SLAMF8Q9P0V8 285 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 ZSWIM5Q9P217 1185 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 PCDHB5Q9Y5E4 795 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 PTPRGP23470 1445 aa6.56□□□□□ -1.36
VPS41-209ENST00000457055 RUSC2Q8N2Y8 1516 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 RECKO95980 971 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 HSP90AB1P08238 724 aaKnown RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 KIR3DL1P43629 444 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 POU5F1BQ06416 359 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 TNK2Q07912 1038 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 CDC37Q16543 378 aaPredicted RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 EFCAB2Q5VUJ9 269 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 CILP2Q8IUL8 1156 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 NLGN1Q8N2Q7 840 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 TTC30BQ8N4P2 665 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 ENOX1Q8TC92 643 aaKnown RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 DHX38Q92620 1227 aaKnown RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 DIRC2Q96SL1 478 aa6.55□□□□□ -1.36
VPS41-209ENST00000457055 DPH2Q9BQC3 489 aaPredicted RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 GEMIN8Q9NWZ8 242 aaKnown RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 CWC25Q9NXE8 425 aaPredicted RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 ISY1Q9ULR0 285 aaKnown RBP6.55□□□□□ -1.36
VPS41-209ENST00000457055 PPP1R12AO14974 1030 aaPredicted RBP6.54□□□□□ -1.36
VPS41-209ENST00000457055 PGRP06401 933 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 TERF1P54274 439 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 DHX8Q14562 1220 aaKnown RBP6.54□□□□□ -1.36
VPS41-209ENST00000457055 RGL3Q3MIN7 710 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 CCDC184Q52MB2 194 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 CDH24Q86UP0 819 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 ZSCAN30Q86W11 494 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 PAF1Q8N7H5 531 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 RSPH1Q8WYR4 309 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 IL17RAQ96F46 866 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 NEUROD6Q96NK8 337 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 NSUN3Q9H649 340 aaKnown RBP6.54□□□□□ -1.36
VPS41-209ENST00000457055 PCDH12Q9NPG4 1184 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 ANAPC4Q9UJX5 808 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 NOL7Q9UMY1 257 aaKnown RBP6.54□□□□□ -1.36
VPS41-209ENST00000457055 TACC3Q9Y6A5 838 aa6.54□□□□□ -1.36
VPS41-209ENST00000457055 MED1Q15648 1581 aaPredicted RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 RBAK-RBAKDNI3L0D1 243 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 GFRA2O00451 464 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 PRPF40AO75400 957 aaKnown RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 CT47B1P0C2W7 299 aaPredicted RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 RAC2P15153 192 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 ATP2B1P20020 1258 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 CFPP27918 469 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 FLT3P36888 993 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 LIG3P49916 1009 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 SATB1Q01826 763 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 MAP3K11Q16584 847 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 CC2D1AQ6P1N0 951 aaPredicted RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 TTC6Q86TZ1 520 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 ANKLE2Q86XL3 938 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 MRPL41Q8IXM3 137 aaKnown RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 LRRC56Q8IYG6 542 aaPredicted RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 FBXO15Q8NCQ5 510 aaPredicted RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 ZSCAN18Q8TBC5 510 aaPredicted RBP6.53□□□□□ -1.36
VPS41-209ENST00000457055 KRTAP4-9Q9BYQ8 210 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 TJP2Q9UDY2 1190 aa6.53□□□□□ -1.36
VPS41-209ENST00000457055 NFIBO00712 420 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 RAPGEF3O95398 923 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 ATICP31939 592 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 GTF2F1P35269 517 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS41-209ENST00000457055 ETV3P41162 512 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 RGS3P49796 1198 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 PSMD2Q13200 908 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 UBE4AQ14139 1066 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 MAPRE1Q15691 268 aaKnown RBP6.52□□□□□ -1.37
VPS41-209ENST00000457055 TSNAXIP1Q2TAA8 658 aa6.52□□□□□ -1.37
VPS41-209ENST00000457055 CCDC92Q53HC0 331 aaPredicted RBP6.52□□□□□ -1.37
VPS41-209ENST00000457055 AGMOQ6ZNB7 445 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms