RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 ICMTO60725 284 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 RPS6KA3P51812 740 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 LIMK1P53667 647 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 ITIH3Q06033 890 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 LSMEM1Q8N8F7 131 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 RBM14Q96PK6 669 aaKnown RBP11.86□□□□□ -0.51
SYNE2-206ENST00000441438 KCNQ5Q9NR82 932 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 ATG3Q9NT62 314 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 NEMFO60524 1076 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 TMCO3Q6UWJ1 677 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 KIAA1211Q6ZU35 1233 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 DZIP1Q86YF9 867 aaKnown RBP11.86□□□□□ -0.51
SYNE2-206ENST00000441438 RPAP2Q8IXW5 612 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-206ENST00000441438 KIAA1524Q8TCG1 905 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 STRBPQ96SI9 672 aaKnown RBP11.86□□□□□ -0.51
SYNE2-206ENST00000441438 DESI2Q9BSY9 194 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 TNMDQ9H2S6 317 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 PARD3Q8TEW0 1356 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 ATP7BP35670 1465 aa11.86□□□□□ -0.51
SYNE2-206ENST00000441438 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 TMEM127O75204 238 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 TYRP1P17643 537 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 MTHFRP42898 656 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 LRRC74AQ0VAA2 488 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 TUBB8Q3ZCM7 444 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 TTC31Q49AM3 519 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 BTNL9Q6UXG8 535 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 SPOCD1Q6ZMY3 1216 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 RAPH1Q70E73 1250 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 RTKN2Q8IZC4 609 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 EPS8L3Q8TE67 593 aaKnown RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 PAPOLBQ9NRJ5 636 aaKnown RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 TRAK1Q9UPV9 953 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 SSX2IPQ9Y2D8 614 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 SPDYE16A6NNV3 312 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 ATP9BO43861 1147 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 PLOD3O60568 738 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 FDX1P10109 184 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 TPP2P29144 1249 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 SKOR1P84550 965 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 AKT1S1Q96B36 256 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 C14orf93Q9H972 538 aaKnown RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 FSD2A1L4K1 749 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 LRRC72A6NJI9 287 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 XPOTO43592 962 aaKnown RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 TRIM27P14373 513 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 DESP17661 470 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 ATP6V1E1P36543 226 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 POLD2P49005 469 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 USP11P51784 963 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 SQSTM1Q13501 440 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 MTMR3Q13615 1198 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 CDH19Q9H159 772 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 PTPRUQ92729 1446 aa11.85□□□□□ -0.51
SYNE2-206ENST00000441438 FAM208AQ9UK61 1670 aaKnown RBP11.85□□□□□ -0.51
SYNE2-206ENST00000441438 GOLGA6L10A0A0M3HER8 536 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 TBCAO75347 108 aaKnown RBP11.84□□□□□ -0.51
SYNE2-206ENST00000441438 IFIT1P09914 478 aaKnown RBP11.84□□□□□ -0.51
SYNE2-206ENST00000441438 CACNB2Q08289 660 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-206ENST00000441438 PICALMQ13492 652 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 METTL24Q5JXM2 366 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 CENPQQ7L2Z9 268 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-206ENST00000441438 TMC4Q7Z404 712 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 IL17REQ8NFR9 667 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 SEMA4AQ9H3S1 761 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 CTNNA3Q9UI47 895 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 NUCB2P80303 420 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 AKAP17AQ02040 695 aaKnown RBP11.84□□□□□ -0.51
SYNE2-206ENST00000441438 TRIM68Q6AZZ1 485 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 GOLGA5Q8TBA6 731 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 PXYLP1Q8TE99 480 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 SGCDQ92629 289 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 NAF1Q96HR8 494 aaKnown RBP11.84□□□□□ -0.51
SYNE2-206ENST00000441438 ATP6V0A4Q9HBG4 840 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 NEUROD4Q9HD90 331 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 NDUFB9Q9Y6M9 179 aa11.84□□□□□ -0.51
SYNE2-206ENST00000441438 CASQ2O14958 399 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 ZNF254O75437 659 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 AP1G2O75843 785 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 MAP2K2P36507 400 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 CCNHP51946 323 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 IQCB1Q15051 598 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 TBC1D1Q86TI0 1168 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 FAM26EQ8N5C1 309 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 CFAP36Q96G28 342 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 SRA1Q9HD15 236 aaKnown RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 YTHDC2Q9H6S0 1430 aaKnown RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 hCG_1642624A0A1W2PR95 340 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 PPP1R12BO60237 982 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 PCP11498 1178 aaKnown RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 TRIM21P19474 475 aaKnown RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 HOXD12P35452 270 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 ZNF771Q7L3S4 317 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 PJA1Q8NG27 643 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 ZNF606Q8WXB4 792 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 UTP14AQ9BVJ6 771 aaKnown RBP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 OSBPL3Q9H4L5 887 aa11.83□□□□□ -0.52
SYNE2-206ENST00000441438 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.83□□□□□ -0.52
SYNE2-206ENST00000441438 VSTM5A8MXK1 200 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms