RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FDX1P10109 184 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 RCAN1P53805 252 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 APOBRQ0VD83 1088 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 FUT2Q10981 343 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 CD99L2Q8TCZ2 262 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 PAGR1Q9BTK6 254 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 MOV10L1Q9BXT6 1211 aaKnown RBP14.5□□□□□ -0.09
USP40-205ENST00000430158 SPATC1LQ9H0A9 340 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 RIOX1Q9H6W3 641 aa14.5□□□□□ -0.09
USP40-205ENST00000430158 CCDC69A6NI79 296 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 KLRF2D3W0D1 207 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 RXRAP19793 462 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 OAZ1P54368 228 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 SNAP25P60880 206 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 RIOX2Q8IUF8 465 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 ADGRF4Q8IZF3 695 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 FANCBQ8NB91 859 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 SHCBP1Q8NEM2 672 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 JMJD4Q9H9V9 463 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 PDRG1Q9NUG6 133 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 GJD2Q9UKL4 321 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 RIPK3Q9Y572 518 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 SLC12A7Q9Y666 1083 aa14.49□□□□□ -0.09
USP40-205ENST00000430158 KLF18A0A0U1RQI7 1052 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 SMARCA1P28370 1054 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 STAT3P40763 770 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 PSMC4P43686 418 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 ATN1P54259 1190 aaPredicted RBP14.48□□□□□ -0.09
USP40-205ENST00000430158 NFXL1Q6ZNB6 911 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.48□□□□□ -0.09
USP40-205ENST00000430158 RAB11FIP4Q86YS3 637 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 SRBD1Q8N5C6 995 aaKnown RBP14.48□□□□□ -0.09
USP40-205ENST00000430158 NUP133Q8WUM0 1156 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 ERO1AQ96HE7 468 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 TSPYL2Q9H2G4 693 aaPredicted RBP14.48□□□□□ -0.09
USP40-205ENST00000430158 EFCC1Q9HA90 598 aa14.48□□□□□ -0.09
USP40-205ENST00000430158 ZBED4O75132 1171 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 PLEKHA8P1O95397 391 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 CALM1P0DP23 149 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 CALM2P0DP24 149 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 CALM3P0DP25 149 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 PDIA3P30101 505 aaKnown RBP14.47□□□□□ -0.09
USP40-205ENST00000430158 CDC27P30260 824 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 TMTC3Q6ZXV5 915 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 OTOP1Q7RTM1 612 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 USP6NLQ92738 828 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 AGBL1Q96MI9 1066 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 TEX13BQ9BXU2 312 aa14.47□□□□□ -0.09
USP40-205ENST00000430158 RAVER2Q9HCJ3 691 aaKnown RBP14.47□□□□□ -0.09
USP40-205ENST00000430158 ZBTB43O43298 467 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 PPP1R11O60927 126 aaPredicted RBP14.46□□□□□ -0.09
USP40-205ENST00000430158 TAL1P17542 331 aaPredicted RBP14.46□□□□□ -0.09
USP40-205ENST00000430158 ERCC3P19447 782 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 MAPK4P31152 587 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 NEK4P51957 841 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 AK2P54819 239 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 NTRK3Q16288 839 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 MORN1Q5T089 497 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 GPR142Q7Z601 462 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 MICU3Q86XE3 530 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 ZNF274Q96GC6 653 aaPredicted RBP14.46□□□□□ -0.09
USP40-205ENST00000430158 LARP6Q9BRS8 491 aaKnown RBP14.46□□□□□ -0.09
USP40-205ENST00000430158 SPZ1Q9BXG8 430 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 TPCN1Q9ULQ1 816 aa14.46□□□□□ -0.09
USP40-205ENST00000430158 ZNF236Q9UL36 1845 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 LCTP09848 1927 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 SLC25A27O95847 323 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 GNRH1P01148 92 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 IGHA2P01877 340 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 ICAM1P05362 532 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 KIF5BP33176 963 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 FCGRTP55899 365 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 CCNA1P78396 465 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 IKQ13123 557 aaPredicted RBP14.45□□□□□ -0.1
USP40-205ENST00000430158 CDC37Q16543 378 aaPredicted RBP14.45□□□□□ -0.1
USP40-205ENST00000430158 QRICH1Q2TAL8 776 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 SNRNP48Q6IEG0 339 aaKnown RBP14.45□□□□□ -0.1
USP40-205ENST00000430158 CCDC174Q6PII3 467 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 MAMSTRQ6ZN01 415 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 CTU1Q7Z7A3 348 aaKnown RBP14.45□□□□□ -0.1
USP40-205ENST00000430158 CCDC144CPQ8IYA2 1237 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 CPXCR1Q8N123 301 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 CTCFLQ8NI51 663 aaPredicted RBP14.45□□□□□ -0.1
USP40-205ENST00000430158 KIF12Q96FN5 646 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 LZTS2Q9BRK4 669 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 MROH8Q9H579 483 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 SRRDQ9UH36 339 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 ISY1Q9ULR0 285 aaKnown RBP14.45□□□□□ -0.1
USP40-205ENST00000430158 GABRQQ9UN88 632 aa14.45□□□□□ -0.1
USP40-205ENST00000430158 KIAA0100Q14667 2235 aaKnown RBP14.45□□□□□ -0.1
USP40-205ENST00000430158 POTEFA5A3E0 1075 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 PTPREP23469 700 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 ADD1P35611 737 aaKnown RBP14.44□□□□□ -0.1
USP40-205ENST00000430158 GNAQP50148 359 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 GRB14Q14449 540 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 PLS1Q14651 629 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 PPP2R5BQ15173 497 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 RTN1Q16799 776 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 PLEKHH3Q7Z736 793 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 CMTR1Q8N1G2 835 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms