RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 WDR19Q8NEZ3 1342 aa7.49□□□□□ -1.21
USP54-202ENST00000413442 ZSWIM8A7E2V4 1837 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 CYP21A2P08686 494 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 CALM1P0DP23 149 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 CALM2P0DP24 149 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 CALM3P0DP25 149 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 PDHBP11177 359 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 PRKAR2AP13861 404 aaKnown RBP7.48□□□□□ -1.21
USP54-202ENST00000413442 GNAQP50148 359 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 HAND2P61296 217 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 ZNF543Q08ER8 600 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 IFIT1BQ5T764 474 aaKnown RBP7.48□□□□□ -1.21
USP54-202ENST00000413442 UBE2Q1Q7Z7E8 422 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 MCF2L2Q86YR7 1114 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 PNMA1Q8ND90 353 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 DNERQ8NFT8 737 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 DEFB118Q96PH6 123 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 LZTS2Q9BRK4 669 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 ESYT1Q9BSJ8 1104 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 TSEN34Q9BSV6 310 aaKnown RBP7.48□□□□□ -1.21
USP54-202ENST00000413442 RANBP17Q9H2T7 1088 aaKnown RBP7.48□□□□□ -1.21
USP54-202ENST00000413442 FBXO28Q9NVF7 368 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 DDX20Q9UHI6 824 aaKnown RBP7.48□□□□□ -1.21
USP54-202ENST00000413442 CNPY2Q9Y2B0 182 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 Q9Y3F1 56 aa7.48□□□□□ -1.21
USP54-202ENST00000413442 KIAA0100Q14667 2235 aaKnown RBP7.48□□□□□ -1.21
USP54-202ENST00000413442 B4E1Z4 1266 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 COBLO75128 1261 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 CDC45O75419 566 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 FARP2O94887 1054 aaPredicted RBP7.47□□□□□ -1.21
USP54-202ENST00000413442 REC8O95072 547 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 PARP1P09874 1014 aaKnown RBP7.47□□□□□ -1.21
USP54-202ENST00000413442 KIF5BP33176 963 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 MCM5P33992 734 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 LIFRP42702 1097 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 NKX3-2P78367 333 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 NECTIN1Q15223 517 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 SYDE2Q5VT97 1194 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 C1orf53Q5VUE5 145 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 LHX8Q68G74 356 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 CLEC10AQ8IUN9 316 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 CPXCR1Q8N123 301 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 LRRC47Q8N1G4 583 aaKnown RBP7.47□□□□□ -1.21
USP54-202ENST00000413442 IL27Q8NEV9 243 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 NPLOC4Q8TAT6 608 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 TRERF1Q96PN7 1200 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 SPC25Q9HBM1 224 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 INCENPQ9NQS7 918 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 FAM184BQ9ULE4 1060 aa7.47□□□□□ -1.21
USP54-202ENST00000413442 E7EWF7 191 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 POTEB2H3BUK9 544 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 DNM1LO00429 736 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 IFIT3O14879 490 aaKnown RBP7.46□□□□□ -1.22
USP54-202ENST00000413442 NMT2O60551 498 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 DUSP11O75319 330 aaKnown RBP7.46□□□□□ -1.22
USP54-202ENST00000413442 CYBAP13498 195 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 AKR1A1P14550 325 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 RCAN1P53805 252 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 WTAPQ15007 396 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 SEC23AQ15436 765 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 CCDC96Q2M329 555 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 IQSEC1Q6DN90 963 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 SYNE3Q6ZMZ3 975 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 CATIPQ7Z7H3 387 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 RNF180Q86T96 592 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 TBC1D10CQ8IV04 446 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 ENAHQ8N8S7 591 aaPredicted RBP7.46□□□□□ -1.22
USP54-202ENST00000413442 FAM133AQ8N9E0 248 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 MORC4Q8TE76 937 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 IWS1Q96ST2 819 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 NUP88Q99567 741 aaPredicted RBP7.46□□□□□ -1.22
USP54-202ENST00000413442 RAVER2Q9HCJ3 691 aaKnown RBP7.46□□□□□ -1.22
USP54-202ENST00000413442 CCPG1Q9ULG6 757 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 MRPL11Q9Y3B7 192 aaKnown RBP7.46□□□□□ -1.22
USP54-202ENST00000413442 TACC3Q9Y6A5 838 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 ZNF536O15090 1300 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 TNKSO95271 1327 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 ABCB11O95342 1321 aa7.46□□□□□ -1.22
USP54-202ENST00000413442 MYH6P13533 1939 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 A0A1W2PPC1 479 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 PALM3A6NDB9 673 aaPredicted RBP7.45□□□□□ -1.22
USP54-202ENST00000413442 KBTBD13C9JR72 458 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 KLRF2D3W0D1 207 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 NKRFO15226 690 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP54-202ENST00000413442 DDAH1O94760 285 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 RARBP10826 455 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 ALAS1P13196 640 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 CNGA1P29973 690 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 GHRHRQ02643 423 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 PTH1RQ03431 593 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 KCTD1Q719H9 257 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 FBXL16Q8N461 479 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 PCSK9Q8NBP7 692 aaKnown RBP7.45□□□□□ -1.22
USP54-202ENST00000413442 IGDCC4Q8TDY8 1250 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 NUP133Q8WUM0 1156 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 DPF3Q92784 378 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 AMNQ9BXJ7 453 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 LSG1Q9H089 658 aaKnown RBP7.45□□□□□ -1.22
USP54-202ENST00000413442 C11orf49Q9H6J7 331 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 RIOX1Q9H6W3 641 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms