RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 TTC14Q96N46 770 aa9□□□□□ -0.97
HMGB3P1-201ENST00000393368 UBA5Q9GZZ9 404 aa9□□□□□ -0.97
HMGB3P1-201ENST00000393368 XRN2Q9H0D6 950 aaKnown RBP eCLIP9□□□□□ -0.97
HMGB3P1-201ENST00000393368 IFIT3O14879 490 aaKnown RBP8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 GJB1P08034 283 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 HOXC6P09630 235 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 ALAS1P13196 640 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 KCTD2Q14681 263 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 NECTIN1Q15223 517 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 MUM1L1Q5H9M0 696 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 PRAMEF19Q5SWL8 479 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 MAP3K21Q5TCX8 1036 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 CASC1Q6TDU7 716 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 TRPV1Q8NER1 839 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 NCOA7Q8NI08 942 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 ANKS1AQ92625 1134 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 LRRC2Q9BYS8 371 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 RANBP17Q9H2T7 1088 aaKnown RBP8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 PAK6Q9NQU5 681 aaPredicted RBP8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 RNF146Q9NTX7 359 aa8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 DDX49Q9Y6V7 483 aaKnown RBP8.99□□□□□ -0.97
HMGB3P1-201ENST00000393368 ZNF236Q9UL36 1845 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 ATP2A1O14983 1001 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 STRNO43815 780 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 PLA2G6O60733 806 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 SGPL1O95470 568 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 TFRCP02786 760 aaKnown RBP8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 GJA8P48165 433 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 OAZ1P54368 228 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 TMEM67Q5HYA8 995 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 ERICH6BQ5W0A0 696 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 ANO1Q5XXA6 986 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 BTNL9Q6UXG8 535 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 RAB11FIP4Q86YS3 637 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 RASEFQ8IZ41 740 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 STAG2Q8N3U4 1231 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 DIS3LQ8TF46 1054 aaKnown RBP8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 MAML3Q96JK9 1138 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 TCEANC2Q96MN5 208 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 TRERF1Q96PN7 1200 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 PURBQ96QR8 312 aaKnown RBP8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 MYL10Q9BUA6 226 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 HMX1Q9NP08 348 aaPredicted RBP8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 CCPG1Q9ULG6 757 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 RBBP6Q7Z6E9 1792 aaKnown RBP8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 DOCK3Q8IZD9 2030 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 RPTORQ8N122 1335 aa8.98□□□□□ -0.97
HMGB3P1-201ENST00000393368 NFIBO00712 420 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 PRC1O43663 620 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 DHX16O60231 1041 aaKnown RBP8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 IGHA2P01877 340 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 ICAM1P05362 532 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 PARP1P09874 1014 aaKnown RBP8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 RXRAP19793 462 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 CNGA1P29973 690 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 COPB2P35606 906 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 CNTN2Q02246 1040 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 WTAPQ15007 396 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 SLC35G1Q2M3R5 365 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 ZNF792Q3KQV3 632 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 ADCK5Q3MIX3 580 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 USH1GQ495M9 461 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 CCDC178Q5BJE1 867 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 MFSD14CQ5VZR4 134 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 TRMT44Q8IYL2 757 aaKnown RBP8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 ABRAQ8N0Z2 381 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 ANKRD35Q8N283 1001 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 LENG1Q96BZ8 264 aaPredicted RBP8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 DDX11Q96FC9 970 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 FGD4Q96M96 766 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 ACAD9Q9H845 621 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 LY9Q9HBG7 655 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 VAT1LQ9HCJ6 419 aa8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 A1CFQ9NQ94 594 aaKnown RBP8.97□□□□□ -0.97
HMGB3P1-201ENST00000393368 DNAJC25-GNG10A0A024R161 153 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 ERICH2A1L162 156 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 SH2B2O14492 632 aaPredicted RBP8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 FARP2O94887 1054 aaPredicted RBP8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 CYBAP13498 195 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 CPA1P15085 419 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 NT5C2P49902 561 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 CDC37Q16543 378 aaPredicted RBP8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 ASPRV1Q53RT3 343 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 GPATCH4Q5T3I0 446 aaKnown RBP8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 OLFML2BQ68BL8 750 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 LHX8Q68G74 356 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 NSMFQ6X4W1 530 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 CCDC144CPQ8IYA2 1237 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 ADGRF4Q8IZF3 695 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 CHST13Q8NET6 341 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 IGDCC4Q8TDY8 1250 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 NUP133Q8WUM0 1156 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 TINF2Q9BSI4 451 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 CRISPLD2Q9H0B8 497 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 SLC5A4Q9NY91 659 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 PCDH10Q9P2E7 1040 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 MAD2L2Q9UI95 211 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 ASTN1O14525 1302 aa8.96□□□□□ -0.98
HMGB3P1-201ENST00000393368 PALM3A6NDB9 673 aaPredicted RBP8.95□□□□□ -0.98
HMGB3P1-201ENST00000393368 SOWAHBA6NEL2 793 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms