RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 HOMER1Q86YM7 354 aa26.16■■□□□ 1.78
VPS16-201ENST00000380443 REXO1Q8N1G1 1221 aaKnown RBP26.16■■□□□ 1.78
VPS16-201ENST00000380443 NFE2L3Q9Y4A8 694 aa26.16■■□□□ 1.78
VPS16-201ENST00000380443 PNMA6FA0A0J9YX94 578 aa26.16■■□□□ 1.78
VPS16-201ENST00000380443 SFPQP23246 707 aaKnown RBP eCLIP26.16■■□□□ 1.78
VPS16-201ENST00000380443 CCZ1BP86790 482 aa26.16■■□□□ 1.78
VPS16-201ENST00000380443 CCZ1P86791 482 aaPredicted RBP26.16■■□□□ 1.78
VPS16-201ENST00000380443 CFAP100Q494V2 611 aa26.16■■□□□ 1.78
VPS16-201ENST00000380443 MKL1Q969V6 931 aa26.16■■□□□ 1.78
VPS16-201ENST00000380443 KCNA3P22001 575 aa26.15■■□□□ 1.78
VPS16-201ENST00000380443 SPATA1Q5VX52 437 aa26.15■■□□□ 1.78
VPS16-201ENST00000380443 VSTM4Q8IW00 320 aa26.15■■□□□ 1.78
VPS16-201ENST00000380443 VAT1LQ9HCJ6 419 aa26.15■■□□□ 1.78
VPS16-201ENST00000380443 DISC1Q9NRI5 854 aa26.15■■□□□ 1.78
VPS16-201ENST00000380443 CDK11BP21127 795 aaKnown RBP26.14■■□□□ 1.78
VPS16-201ENST00000380443 UBA7P41226 1012 aa26.14■■□□□ 1.78
VPS16-201ENST00000380443 KIAA0825Q8IV33 1275 aa26.14■■□□□ 1.78
VPS16-201ENST00000380443 CCDC112Q8NEF3 446 aa26.14■■□□□ 1.78
VPS16-201ENST00000380443 UBA5Q9GZZ9 404 aa26.14■■□□□ 1.78
VPS16-201ENST00000380443 GLT8D2Q9H1C3 349 aa26.14■■□□□ 1.78
VPS16-201ENST00000380443 NYAP2Q9P242 653 aa26.14■■□□□ 1.78
VPS16-201ENST00000380443 GOLGB1Q14789 3259 aaKnown RBP26.14■■□□□ 1.77
VPS16-201ENST00000380443 COL2A1P02458 1487 aaPredicted RBP26.14■■□□□ 1.77
VPS16-201ENST00000380443 OR52Z1P0C646 297 aa26.14■■□□□ 1.77
VPS16-201ENST00000380443 STAT6P42226 847 aa26.14■■□□□ 1.77
VPS16-201ENST00000380443 FMR1Q06787 632 aaKnown RBP eCLIP26.14■■□□□ 1.77
VPS16-201ENST00000380443 NFIAQ12857 509 aa26.14■■□□□ 1.77
VPS16-201ENST00000380443 LRRC47Q8N1G4 583 aaKnown RBP26.14■■□□□ 1.77
VPS16-201ENST00000380443 GTPBP4Q9BZE4 634 aaKnown RBP26.14■■□□□ 1.77
VPS16-201ENST00000380443 KANSL2Q9H9L4 492 aa26.14■■□□□ 1.77
VPS16-201ENST00000380443 ENTPD3O75355 529 aa26.13■■□□□ 1.77
VPS16-201ENST00000380443 ADCY7P51828 1080 aa26.13■■□□□ 1.77
VPS16-201ENST00000380443 CUL4BQ13620 913 aa26.13■■□□□ 1.77
VPS16-201ENST00000380443 MYRIPQ8NFW9 859 aa26.13■■□□□ 1.77
VPS16-201ENST00000380443 CPVLQ9H3G5 476 aa26.13■■□□□ 1.77
VPS16-201ENST00000380443 ZNF646O15015 1829 aaPredicted RBP26.13■■□□□ 1.77
VPS16-201ENST00000380443 RRAGBQ5VZM2 374 aa26.12■■□□□ 1.77
VPS16-201ENST00000380443 DCAF4Q8WV16 495 aa26.12■■□□□ 1.77
VPS16-201ENST00000380443 TRIM34Q9BYJ4 488 aa26.12■■□□□ 1.77
VPS16-201ENST00000380443 TMEM60Q9H2L4 133 aa26.12■■□□□ 1.77
VPS16-201ENST00000380443 KCNQ5Q9NR82 932 aa26.12■■□□□ 1.77
VPS16-201ENST00000380443 FRMPD2Q68DX3 1309 aaPredicted RBP26.12■■□□□ 1.77
VPS16-201ENST00000380443 MPHOSPH10O00566 681 aaKnown RBP26.11■■□□□ 1.77
VPS16-201ENST00000380443 DYNC1I1O14576 645 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 RBM5P52756 815 aaKnown RBP eCLIP26.11■■□□□ 1.77
VPS16-201ENST00000380443 DALRD3Q5D0E6 543 aaKnown RBP26.11■■□□□ 1.77
VPS16-201ENST00000380443 TATDN1Q6P1N9 297 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 MTMR8Q96EF0 704 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 ADAMTSL1Q8N6G6 1762 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 ARID5BQ14865 1188 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 RASGRP2Q7LDG7 609 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 CTAGE1Q96RT6 745 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 JMJD4Q9H9V9 463 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 RIC8AQ9NPQ8 531 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 FAM198AQ9UFP1 575 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 BCS1LQ9Y276 419 aa26.11■■□□□ 1.77
VPS16-201ENST00000380443 UQCRHLA0A096LP55 91 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 PPP1R3GB7ZBB8 358 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 GRIN3BO60391 1043 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 CCNT1O60563 726 aaKnown RBP26.1■■□□□ 1.77
VPS16-201ENST00000380443 UQCRHP07919 91 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 TPD52L1Q16890 204 aaPredicted RBP26.1■■□□□ 1.77
VPS16-201ENST00000380443 CERKLQ49MI3 558 aaPredicted RBP26.1■■□□□ 1.77
VPS16-201ENST00000380443 ZNF658Q5TYW1 1059 aaPredicted RBP26.1■■□□□ 1.77
VPS16-201ENST00000380443 ARMCX5Q6P1M9 558 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 TTLL6Q8N841 843 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 TBCKQ8TEA7 893 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 GPCPD1Q9NPB8 672 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 SYNRGQ9UMZ2 1314 aa26.1■■□□□ 1.77
VPS16-201ENST00000380443 BRCA1P38398 1863 aaKnown RBP26.1■■□□□ 1.77
VPS16-201ENST00000380443 ATRNL1Q5VV63 1379 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 KIF2AO00139 706 aaPredicted RBP26.09■■□□□ 1.77
VPS16-201ENST00000380443 CCP110O43303 1012 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 KCNB1Q14721 858 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 LETM2Q2VYF4 491 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 ADGRF4Q8IZF3 695 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 DPF2Q92785 391 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 NAP1L4Q99733 375 aaKnown RBP26.09■■□□□ 1.77
VPS16-201ENST00000380443 VPS33BQ9H267 617 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 SCN9AQ15858 1988 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 TUBB4AP04350 444 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 RPN1P04843 607 aaKnown RBP26.09■■□□□ 1.77
VPS16-201ENST00000380443 GTF2F1P35269 517 aaKnown RBP eCLIP26.09■■□□□ 1.77
VPS16-201ENST00000380443 MRPL12P52815 198 aaKnown RBP26.09■■□□□ 1.77
VPS16-201ENST00000380443 AOC3Q16853 763 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 TMEM179Q6ZVK1 233 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 RTKN2Q8IZC4 609 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 SYNPO2Q9UMS6 1093 aa26.09■■□□□ 1.77
VPS16-201ENST00000380443 ZBTB5O15062 677 aa26.08■■□□□ 1.77
VPS16-201ENST00000380443 ZFPM1Q8IX07 1006 aa26.08■■□□□ 1.77
VPS16-201ENST00000380443 RWDD2AQ9UIY3 292 aa26.08■■□□□ 1.77
VPS16-201ENST00000380443 PAXBP1Q9Y5B6 917 aa26.08■■□□□ 1.77
VPS16-201ENST00000380443 YBX3P16989 372 aaKnown RBP eCLIP26.07■■□□□ 1.76
VPS16-201ENST00000380443 EIF6P56537 245 aaKnown RBP26.07■■□□□ 1.76
VPS16-201ENST00000380443 KARSQ15046 597 aaKnown RBP26.07■■□□□ 1.76
VPS16-201ENST00000380443 CCDC96Q2M329 555 aa26.07■■□□□ 1.76
VPS16-201ENST00000380443 RASSF8Q8NHQ8 419 aa26.07■■□□□ 1.76
VPS16-201ENST00000380443 MED15Q96RN5 788 aa26.07■■□□□ 1.76
VPS16-201ENST00000380443 MTRQ99707 1265 aa26.07■■□□□ 1.76
VPS16-201ENST00000380443 DNAJC18Q9H819 358 aa26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms