RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 KIF1BO60333 1816 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 EEF1B2P24534 225 aaKnown RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CORO7P57737 925 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CWF19L2Q2TBE0 894 aaKnown RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 SERPINB1P30740 379 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 C17orf53Q8N3J3 647 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 SYBUQ9NX95 663 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 MPP6Q9NZW5 540 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 GMNCA6NCL1 334 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 MINDY4BA8MYZ0 360 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CC2D1AQ6P1N0 951 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 KCNJ18B7U540 433 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 H0Y626 953 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 XPOTO43592 962 aaKnown RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 SNUPNO95149 360 aaKnown RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 TRIM16O95361 564 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 S100BP04271 92 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 ACTN1P12814 892 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 NLRP6P59044 892 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 KCNJ12Q14500 433 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CENPUQ71F23 418 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 GUCY2DQ02846 1103 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 AGGF1Q8N302 714 aaeCLIP13.74□□□□□ -0.21
COL6A3-203ENST00000353578 PARD6BQ9BYG5 372 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 TMOD4Q9NZQ9 345 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 EPN3Q9H201 632 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 AP4S1Q9Y587 144 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 PPP2R5DQ14738 602 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 OR9Q1Q8NGQ5 310 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 ETAA1Q9NY74 926 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 CACNA1FO60840 1977 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-203ENST00000353578 GRID2IPA4D2P6 1211 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 SEMA3EO15041 775 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 OPTNQ96CV9 577 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 RIOK1Q9BRS2 568 aaKnown RBP13.73□□□□□ -0.21
COL6A3-203ENST00000353578 SLF1Q9BQI6 1058 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 NT5C3AQ9H0P0 336 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 GYG2O15488 501 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 TUBA4AP68366 448 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 RNF207Q6ZRF8 634 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 ZMYND8Q9ULU4 1186 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-203ENST00000353578 TBKBP1A7MCY6 615 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 ZNF839A8K0R7 811 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 PODXLO00592 558 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 STX1BP61266 288 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 KLHL7Q8IXQ5 586 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 RGS22Q8NE09 1264 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 FAM129AQ9BZQ8 928 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 JADE1Q6IE81 842 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 POTEAQ6S8J7 498 aa13.73□□□□□ -0.21
COL6A3-203ENST00000353578 ZRANB2O95218 330 aaKnown RBP eCLIP13.72□□□□□ -0.21
COL6A3-203ENST00000353578 ESRRAP11474 423 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-203ENST00000353578 PLCG2P16885 1265 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 ATP8B2P98198 1209 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 MFN1Q8IWA4 741 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 CSRNP1Q96S65 589 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 KCNH5Q8NCM2 988 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 MBD2Q9UBB5 411 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 ZNF644Q9H582 1327 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-203ENST00000353578 TMEM110-MUSTN1A8MSY1 372 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 KLC3Q6P597 504 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 FRA10AC1Q70Z53 315 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 NELFBQ8WX92 580 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 IPO11Q9UI26 975 aaKnown RBP13.72□□□□□ -0.21
COL6A3-203ENST00000353578 CABP4P57796 275 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 SPARCL1Q14515 664 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 NLRP2Q9NX02 1062 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 RAB14P61106 215 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 C2CD5Q86YS7 1000 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 MGARPQ8TDB4 240 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 ABCA5Q8WWZ7 1642 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 BIVM-ERCC5R4GMW8 1640 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 GJC2Q5T442 439 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-203ENST00000353578 DDI1Q8WTU0 396 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 RSAD2Q8WXG1 361 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.72□□□□□ -0.21
COL6A3-203ENST00000353578 GIPC2Q8TF65 315 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 ADCY8P40145 1251 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 STAT2P52630 851 aa13.72□□□□□ -0.21
COL6A3-203ENST00000353578 PDZD4Q76G19 769 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-203ENST00000353578 TSPY2A6NKD2 308 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 HLA-DOAP06340 250 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 TSPY3P0CV98 308 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 TSPY8P0CW00 308 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 CMA1P23946 247 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 STAT1P42224 750 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 TSPY1Q01534 308 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 NUDCD1Q96RS6 583 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 BRIP1Q9BX63 1249 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 CUL4BQ13620 913 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 ZNF711Q9Y462 761 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 GRAMD1BQ3KR37 738 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 ARHGEF25Q86VW2 580 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 TEX13AQ9BXU3 409 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-203ENST00000353578 SNX5Q9Y5X3 404 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 NSFP46459 744 aaKnown RBP13.71□□□□□ -0.21
COL6A3-203ENST00000353578 TFAP4Q01664 338 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 TSC22D1Q15714 1073 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms