RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 TROAPQ12815 778 aa17.81■□□□□ 0.44
UBE3B-201ENST00000340074 CATIPQ7Z7H3 387 aa17.81■□□□□ 0.44
UBE3B-201ENST00000340074 TMTC2Q8N394 836 aa17.81■□□□□ 0.44
UBE3B-201ENST00000340074 JAKMIP1Q96N16 626 aaKnown RBP17.81■□□□□ 0.44
UBE3B-201ENST00000340074 MMP19Q99542 508 aa17.81■□□□□ 0.44
UBE3B-201ENST00000340074 APBA2Q99767 749 aa17.81■□□□□ 0.44
UBE3B-201ENST00000340074 HOMER2Q9NSB8 354 aa17.81■□□□□ 0.44
UBE3B-201ENST00000340074 MAD2L2Q9UI95 211 aa17.81■□□□□ 0.44
UBE3B-201ENST00000340074 WDR19Q8NEZ3 1342 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 MCM3APO60318 1980 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 HMGB1P09429 215 aaKnown RBP17.8■□□□□ 0.44
UBE3B-201ENST00000340074 LIFRP42702 1097 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 GRM4Q14833 912 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 CCL14Q16627 93 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 NFXL1Q6ZNB6 911 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 DPP9Q86TI2 863 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 ADGRF4Q8IZF3 695 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 ZNF654Q8IZM8 581 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 ABRAQ8N0Z2 381 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 NPLOC4Q8TAT6 608 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 TRIB2Q92519 343 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 MYL10Q9BUA6 226 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 GTF3C3Q9Y5Q9 886 aa17.8■□□□□ 0.44
UBE3B-201ENST00000340074 LCTP09848 1927 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 PALM3A6NDB9 673 aaPredicted RBP17.79■□□□□ 0.44
UBE3B-201ENST00000340074 CCDC69A6NI79 296 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 COBLO75128 1261 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 INHAP05111 366 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 ICAM1P05362 532 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 HOXC6P09630 235 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 ALAS1P13196 640 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 CPA1P15085 419 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 TAL1P17542 331 aaPredicted RBP17.79■□□□□ 0.44
UBE3B-201ENST00000340074 KCTD2Q14681 263 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 IFFO2Q5TF58 517 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 NUP133Q8WUM0 1156 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 CCPG1Q9ULG6 757 aa17.79■□□□□ 0.44
UBE3B-201ENST00000340074 KLRF2D3W0D1 207 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 DHX16O60231 1041 aaKnown RBP17.78■□□□□ 0.44
UBE3B-201ENST00000340074 HMGCRP04035 888 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 UBXN2AP68543 259 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 MTFR1Q15390 333 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 BLOC1S2Q6QNY1 142 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 SGMS1Q86VZ5 419 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 CHST13Q8NET6 341 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 TRERF1Q96PN7 1200 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 VAT1LQ9HCJ6 419 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 RNF146Q9NTX7 359 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 FLRT1Q9NZU1 646 aa17.78■□□□□ 0.44
UBE3B-201ENST00000340074 MKI67P46013 3256 aaKnown RBP17.78■□□□□ 0.44
UBE3B-201ENST00000340074 DDAH1O94760 285 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 SEC24BO95487 1268 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 PGK2P07205 417 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 CASTP20810 708 aaKnown RBP17.77■□□□□ 0.44
UBE3B-201ENST00000340074 SOX10P56693 466 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 TRIM32Q13049 653 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 CDC37Q16543 378 aaPredicted RBP17.77■□□□□ 0.44
UBE3B-201ENST00000340074 TKFCQ3LXA3 575 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 TRMT44Q8IYL2 757 aaKnown RBP17.77■□□□□ 0.44
UBE3B-201ENST00000340074 ACAD9Q9H845 621 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 JMJD4Q9H9V9 463 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 FBXO40Q9UH90 709 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 SLC12A7Q9Y666 1083 aa17.77■□□□□ 0.44
UBE3B-201ENST00000340074 RXRAP19793 462 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 PSMA5P28066 241 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 C8orf34Q49A92 452 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 MUM1L1Q5H9M0 696 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.76■□□□□ 0.43
UBE3B-201ENST00000340074 RAB11FIP4Q86YS3 637 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 ANKRD35Q8N283 1001 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 MAP3K14Q99558 947 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 SLC5A4Q9NY91 659 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 FRMPD3Q5JV73 1810 aa17.76■□□□□ 0.43
UBE3B-201ENST00000340074 EIF5BO60841 1220 aaKnown RBP17.75■□□□□ 0.43
UBE3B-201ENST00000340074 CCL5P13501 91 aa17.75■□□□□ 0.43
UBE3B-201ENST00000340074 RPS6KB1P23443 525 aa17.75■□□□□ 0.43
UBE3B-201ENST00000340074 SLC35G1Q2M3R5 365 aa17.75■□□□□ 0.43
UBE3B-201ENST00000340074 Q6ZUG5 572 aa17.75■□□□□ 0.43
UBE3B-201ENST00000340074 CCDC144CPQ8IYA2 1237 aa17.75■□□□□ 0.43
UBE3B-201ENST00000340074 CTCFLQ8NI51 663 aaPredicted RBP17.75■□□□□ 0.43
UBE3B-201ENST00000340074 DDX11Q96FC9 970 aa17.75■□□□□ 0.43
UBE3B-201ENST00000340074 TMEM106CQ9BVX2 250 aa17.75■□□□□ 0.43
UBE3B-201ENST00000340074 DNAJC25-GNG10A0A024R161 153 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 FGD1P98174 961 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 QRICH1Q2TAL8 776 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 ZNF792Q3KQV3 632 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 USH1GQ495M9 461 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 MAML3Q96JK9 1138 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 RNF208Q9H0X6 261 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 UNC93B1Q9H1C4 597 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 RIOX1Q9H6W3 641 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 A1CFQ9NQ94 594 aaKnown RBP17.74■□□□□ 0.43
UBE3B-201ENST00000340074 PNMA2Q9UL42 364 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 BRPF3Q9ULD4 1205 aa17.74■□□□□ 0.43
UBE3B-201ENST00000340074 POTEFA5A3E0 1075 aa17.73■□□□□ 0.43
UBE3B-201ENST00000340074 CYTH3O43739 400 aa17.73■□□□□ 0.43
UBE3B-201ENST00000340074 CALM1P0DP23 149 aa17.73■□□□□ 0.43
UBE3B-201ENST00000340074 CALM2P0DP24 149 aa17.73■□□□□ 0.43
UBE3B-201ENST00000340074 CALM3P0DP25 149 aa17.73■□□□□ 0.43
UBE3B-201ENST00000340074 PRKAR2AP13861 404 aaKnown RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms