RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TMOD1P28289 359 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 ZNF654Q8IZM8 581 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 SPDL1Q96EA4 605 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 XPO4Q9C0E2 1151 aaKnown RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 DNMBPQ6XZF7 1577 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 UBN2Q6ZU65 1347 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 OPHN1O60890 802 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 HADHQ16836 314 aaKnown RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 CERKLQ49MI3 558 aaPredicted RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 MYOCDQ8IZQ8 938 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 MYRIPQ8NFW9 859 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 CHURC1Q8WUH1 139 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 MRPL46Q9H2W6 279 aaKnown RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 RIC8AQ9NPQ8 531 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 H7C0C1 242 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 TUBBP07437 444 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 TROVE2P10155 538 aaKnown RBP eCLIP13.84□□□□□ -0.19
SDC3-201ENST00000336798 PDE6BP35913 854 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 ATP5OP48047 213 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 MUM1Q2TAK8 710 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 RAPH1Q70E73 1250 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 RNF217Q8TC41 542 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 LZTS2Q9BRK4 669 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 PCDHA12Q9UN75 941 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 NOC2LQ9Y3T9 749 aaKnown RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 KRT3P12035 628 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 ARMCX5Q6P1M9 558 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 FAM71BQ8TC56 605 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 ZSCAN10Q96SZ4 725 aaPredicted RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 SEPT9Q9UHD8 586 aaPredicted RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 AKT3Q9Y243 479 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 URB2Q14146 1524 aaKnown RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 MMEL1Q495T6 779 aa13.83□□□□□ -0.19
SDC3-201ENST00000336798 HP1BP3Q5SSJ5 553 aaPredicted RBP13.83□□□□□ -0.19
SDC3-201ENST00000336798 PARP2Q9UGN5 583 aa13.83□□□□□ -0.19
SDC3-201ENST00000336798 THAP12O43422 761 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 HS1BP3Q53T59 392 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 RAB17Q9H0T7 212 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 HESX1Q9UBX0 185 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 KDM2BQ8NHM5 1336 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 TTC30AQ86WT1 665 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 MRFAP1L1Q96HT8 127 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 CLIC6Q96NY7 704 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 RPS6KC1Q96S38 1066 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 PTPN21Q16825 1174 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 RPRD2Q5VT52 1461 aaKnown RBP13.83□□□□□ -0.2
SDC3-201ENST00000336798 TMEM232C9JQI7 657 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 XPAP23025 273 aaPredicted RBP13.83□□□□□ -0.2
SDC3-201ENST00000336798 MTMR3Q13615 1198 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 CCDC38Q502W7 563 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 PLA2G4DQ86XP0 818 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 RFX6Q8HWS3 928 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 NT5C3AQ9H0P0 336 aa13.83□□□□□ -0.2
SDC3-201ENST00000336798 PHBP35232 272 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 BTDP43251 543 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 DMP1Q13316 513 aaPredicted RBP13.82□□□□□ -0.2
SDC3-201ENST00000336798 DPY19L2Q6NUT2 758 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 POTEDQ86YR6 584 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.82□□□□□ -0.2
SDC3-201ENST00000336798 OLA1Q9NTK5 396 aaKnown RBP13.82□□□□□ -0.2
SDC3-201ENST00000336798 CCPG1Q9ULG6 757 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 POC1B-GALNT4F8VUJ3 575 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 BNIP3LO60238 219 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 CTSWP56202 376 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 FAM178BQ8IXR5 827 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 BLIDQ8IZY5 108 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 P3H4Q92791 437 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 KDM3AQ9Y4C1 1321 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 SPECC1L-ADORA2AF8WAN1 911 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 DPP9Q86TI2 863 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 CXorf38Q8TB03 319 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 GJA10Q969M2 543 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 ARPP21Q9UBL0 812 aaPredicted RBP13.82□□□□□ -0.2
SDC3-201ENST00000336798 ANAPC5Q9UJX4 755 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 RNF40O75150 1001 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 GNL1P36915 607 aaPredicted RBP13.82□□□□□ -0.2
SDC3-201ENST00000336798 CACNB1Q02641 598 aaPredicted RBP13.82□□□□□ -0.2
SDC3-201ENST00000336798 FBXO11Q86XK2 927 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 PGBD1Q96JS3 809 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 CARD14Q9BXL6 1004 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 SGSM2O43147 1006 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 PFKFB1P16118 471 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 SERPINB6P35237 376 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 MAIP1Q8WWC4 291 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 TEKT3Q9BXF9 490 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 SAR1BQ9Y6B6 198 aa13.82□□□□□ -0.2
SDC3-201ENST00000336798 YWHAGP61981 247 aaKnown RBP eCLIP13.81□□□□□ -0.2
SDC3-201ENST00000336798 BFSP1Q12934 665 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ABI1Q8IZP0 508 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 UBN1Q9NPG3 1134 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ZNF148Q9UQR1 794 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ANGPTL3Q9Y5C1 460 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 A6NJR5 290 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 GNGT1P63211 74 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 SNX1Q13596 522 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ME3Q16798 604 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 SULF1Q8IWU6 871 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 METTL14Q9HCE5 456 aaKnown RBP13.81□□□□□ -0.2
SDC3-201ENST00000336798 ATP8A2Q9NTI2 1148 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 RPS8P62241 208 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms