RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 JAKMIP2Q96AA8 810 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 MMRN2Q9H8L6 949 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 EXOC1Q9NV70 894 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 LTBP4Q8N2S1 1624 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 H7C1D1 291 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 NAPAP54920 295 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 ANKRD13CQ8N6S4 541 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 MB21D1Q8N884 522 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 LIMA1Q9UHB6 759 aaKnown RBP14.17□□□□□ -0.14
LIG1-201ENST00000263274 SAR1BQ9Y6B6 198 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 DUSP10Q9Y6W6 482 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 COL18A1P39060 1754 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 ZNF185O15231 689 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 MYCNP04198 464 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 ATP2B2Q01814 1243 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 UBE4AQ14139 1066 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 DIXDC1Q155Q3 683 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 PFKFB3Q16875 520 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 WHAMMP3Q1A5X7 153 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 PDXDC2PQ6P474 469 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 DYMQ7RTS9 669 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 RIN2Q8WYP3 895 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 TUBGCP2Q9BSJ2 902 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 NOC4LQ9BVI4 516 aaKnown RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 DISC1Q9NRI5 854 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 FAM207AQ9NSI2 230 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 C4AP0C0L4 1744 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 C4BP0C0L5 1744 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 KRT86O43790 486 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 PBX1P40424 430 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 TECP42680 631 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 SPA17Q15506 151 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 MAPKAPK5Q8IW41 473 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 TGFBRAP1Q8WUH2 860 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 GPR101Q96P66 508 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 CRACR2AQ9BSW2 395 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 BRIP1Q9BX63 1249 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 SLC39A2Q9NP94 309 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 CYLC1P35663 651 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 TXKP42681 527 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 RPS8P62241 208 aaKnown RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 PPARDQ03181 441 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 NPY5RQ15761 445 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 KRT26Q7Z3Y9 468 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 NBPF5PQ86XG9 351 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 SMCR8Q8TEV9 937 aaPredicted RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 NSUN4Q96CB9 384 aaKnown RBP14.16□□□□□ -0.14
LIG1-201ENST00000263274 CDK5RAP3Q96JB5 506 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 MMS19Q96T76 1030 aa14.16□□□□□ -0.14
LIG1-201ENST00000263274 MYH2Q9UKX2 1941 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 TRIM66O15016 1216 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 SEMA3EO15041 775 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 E2F4Q16254 413 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 DNAJC21Q5F1R6 531 aaKnown RBP14.15□□□□□ -0.14
LIG1-201ENST00000263274 FAM182BQ5T319 152 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 TYW1BQ6NUM6 668 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 CCDC42Q96M95 316 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 NLRP3Q96P20 1036 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 MYH7P12883 1935 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 LAMB4A4D0S4 1761 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 LONP1P36776 959 aaKnown RBP14.15□□□□□ -0.14
LIG1-201ENST00000263274 ARHGAP25P42331 645 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 SLC20A2Q08357 652 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 SOGA3Q5TF21 947 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 CABP7Q86V35 215 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 ZNF384Q8TF68 577 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 PYM1Q9BRP8 204 aaKnown RBP14.15□□□□□ -0.14
LIG1-201ENST00000263274 ANAPC4Q9UJX5 808 aa14.15□□□□□ -0.14
LIG1-201ENST00000263274 AKR1B10O60218 316 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 FCER1AP12319 257 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 CXCR5P32302 372 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 RCAN1P53805 252 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 TRIM14Q14142 442 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 MTA3Q9BTC8 594 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 RASSF4Q9H2L5 321 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 PCDHA4Q9UN74 947 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 TULP2O00295 520 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 ZPR1O75312 459 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 PLCG1P19174 1290 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 KRT83P78385 493 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 KIF5AQ12840 1032 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 TXNRD3Q86VQ6 643 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 FAM204AQ9H8W3 233 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 L1RE1Q9UN81 338 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 BCL9O00512 1426 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 LRRIQ3A6PVS8 624 aaPredicted RBP14.14□□□□□ -0.15
LIG1-201ENST00000263274 LACRTQ9GZZ8 138 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 UBA5Q9GZZ9 404 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 HAUS4Q9H6D7 363 aa14.14□□□□□ -0.15
LIG1-201ENST00000263274 BIN2Q9UBW5 565 aaPredicted RBP14.14□□□□□ -0.15
LIG1-201ENST00000263274 NUP188Q5SRE5 1749 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 EIF6P56537 245 aaKnown RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 C2orf54Q08AI8 447 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 CCDC181Q5TID7 509 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 CCDC70Q6NSX1 233 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 SMARCC1Q92922 1105 aaPredicted RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 EXOC4Q96A65 974 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 CNOT6LQ96LI5 555 aaKnown RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 ZHX3Q9H4I2 956 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 SRP68Q9UHB9 627 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms