RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ARID5AQ03989 594 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 SPOUT1Q5T280 376 aaKnown RBP14.06□□□□□ -0.16
USP40-201ENST00000251722 USP17L1Q7RTZ2 530 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 TBC1D31Q96DN5 1066 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 WWC3Q9ULE0 1092 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 CCPG1Q9ULG6 757 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 LRRD1A4D1F6 860 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 ATP8B1O43520 1251 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 CREB3O43889 395 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 DNAJC8O75937 253 aaPredicted RBP14.06□□□□□ -0.16
USP40-201ENST00000251722 CNGA1P29973 690 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 POSTNQ15063 836 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 KLRF2D3W0D1 207 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 OR52Z1P0C646 297 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 MXRA7P84157 204 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 AK8Q96MA6 479 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 BAG1Q99933 345 aaPredicted RBP14.06□□□□□ -0.16
USP40-201ENST00000251722 GJC1P36383 396 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 STX17P56962 302 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 LEO1Q8WVC0 666 aaPredicted RBP14.06□□□□□ -0.16
USP40-201ENST00000251722 IFNKQ9P0W0 207 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 ZBTB1Q9Y2K1 713 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.05□□□□□ -0.16
USP40-201ENST00000251722 E7EVH7 732 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 PPP1R12AO14974 1030 aaPredicted RBP14.05□□□□□ -0.16
USP40-201ENST00000251722 GAP43P17677 238 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 NCAPG2Q86XI2 1143 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 PLEKHF1Q96S99 279 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 BCAMP50895 628 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 IFT122Q9HBG6 1241 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 PI4KBQ9UBF8 816 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 DNAI1Q9UI46 699 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 TNKSO95271 1327 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 GREM2Q9H772 168 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 ASAP1Q9ULH1 1129 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 PTGS1P23219 599 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 PRKG1Q13976 671 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 NOSTRINQ8IVI9 506 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 ZNF277Q9NRM2 450 aaPredicted RBP14.05□□□□□ -0.16
USP40-201ENST00000251722 LAMC1P11047 1609 aa14.05□□□□□ -0.16
USP40-201ENST00000251722 POLR2DO15514 142 aaKnown RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 DOK7Q18PE1 504 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 ERCC6LQ2NKX8 1250 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 DPP9Q86TI2 863 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 NLRP10Q86W26 655 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 IGSF22Q8N9C0 903 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 MRFAP1Q9Y605 127 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 TULP4Q9NRJ4 1543 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 TESPA1A2RU30 521 aaPredicted RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 ATP2C2O75185 946 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 SMIM24O75264 130 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 MYL1P05976 194 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 LIG4P49917 911 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 PSMD7P51665 324 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 DMP1Q13316 513 aaPredicted RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 ZMYM1Q5SVZ6 1142 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 LGSNQ5TDP6 509 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 PLA2G4DQ86XP0 818 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 CABS1Q96KC9 395 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 RNF26Q9BY78 433 aaPredicted RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 PCDHA12Q9UN75 941 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 NDUFAB1O14561 156 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 VIMP08670 466 aaKnown RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 CCND2P30279 289 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 SESN3P58005 492 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 CCDC122Q5T0U0 273 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 MIS18BP1Q6P0N0 1132 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 SND1Q7KZF4 910 aaKnown RBP eCLIP14.04□□□□□ -0.16
USP40-201ENST00000251722 N4BP2L2Q92802 583 aaPredicted RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 DTNBP1Q96EV8 351 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 UIMC1Q96RL1 719 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 CSRNP1Q96S65 589 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 SMC6Q96SB8 1091 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 A0A1B0GVL5 298 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 HSPD1P10809 573 aaKnown RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 POLR2BP30876 1174 aaKnown RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 NBPF20Q3BBV1 942 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 MYOCDQ8IZQ8 938 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 GBP5Q96PP8 586 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 PRKAG2Q9UGJ0 569 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 NARFQ9UHQ1 456 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 TNNQ9UQP3 1299 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 ZNF335Q9H4Z2 1342 aaPredicted RBP14.04□□□□□ -0.16
USP40-201ENST00000251722 PLIN2Q99541 437 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 FBXO40Q9UH90 709 aa14.04□□□□□ -0.16
USP40-201ENST00000251722 CARMIL3Q8ND23 1372 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 ARL1P40616 181 aaPredicted RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 FAM47AQ5JRC9 791 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 DCUN1D2Q6PH85 259 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 TPH2Q8IWU9 490 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 DDX39AO00148 427 aaKnown RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 MYO1CO00159 1063 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 BPIFB4P59827 614 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 MAP7D1Q3KQU3 841 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 ADALQ6DHV7 355 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 DDX25Q9UHL0 483 aaKnown RBP14.03□□□□□ -0.16
USP40-201ENST00000251722 ZNF202O95125 648 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 TERF2Q15554 542 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 SNCBQ16143 134 aa14.03□□□□□ -0.16
USP40-201ENST00000251722 NBPF9Q3BBW0 867 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms