RNA–Protein interactions for RNA: ENSMUST00000027988.7

Ccdc3-201, Transcript of Coiled-coil domain-containing protein 3, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc3, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3-201ENSMUST00000027988 OplahQ8K010 1288 aa20.63■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Znf131Q8K3J5 619 aa20.63■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Scgb2b11A0A087WR49 112 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Pabpc1lA2A5N3 607 aaKnown RBP20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Calcoco2A2A6M5 331 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Enc1O35709 589 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Lrrc4bP0C192 709 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Fxr1Q61584 677 aaKnown RBP20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 LRWD1Q8BUI3 648 aaKnown RBP20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Dnajc7Q9QYI3 494 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Mtmr9Q9Z2D0 545 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Nr1i2O54915 431 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Alppl2P24823 529 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 PRAG1Q571I4 1179 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Islr2Q5RKR3 745 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Mtss1lQ6P9S0 715 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Ccdc122Q8BVN0 290 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 HmcesQ8R1M0 353 aaKnown RBP20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Snrnp35Q9D384 244 aa20.62■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Gm7356A0A087WSA6 508 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Cyb5rlB1AS42 316 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Gm5934D3Z4U6 212 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Foxn2E9Q7L6 429 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 RaraP11416 462 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Gas1Q01721 343 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Znf667Q2TL60 609 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Jakmip3Q5DTN8 844 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Ccna1Q61456 421 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Znf280dQ68FE8 974 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Zcchc17Q9ESX4 241 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Trp53inp1Q9QXE4 239 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Plekhg2Q6KAU7 1340 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 SarsP26638 512 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Usp5P56399 858 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Nsrp1Q5NCR9 542 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Lrrn2Q6PHP6 730 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Krt82Q99M74 516 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Tfap4Q9JIZ5 338 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Pcdh11xF6ZNL5 1338 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Etnk2A7MCT6 385 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Dnm2P39054 870 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Nol4P60954 483 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Sf3b2Q3UJB0 878 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Cep131Q62036 1060 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Antxr2Q6DFX2 487 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Pabpc4Q6PHQ9 660 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Nop9Q8BMC4 636 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Card14Q99KF0 999 aa20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Syf2Q9D198 242 aaKnown RBP20.61■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 A430078G23RikE9Q7Y4 484 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Prl2c2P04095 224 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Cct6bQ61390 531 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Sema4bQ62179 823 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Trim9Q8C7M3 817 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Exoc1Q8R3S6 894 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Cabp7Q91ZM8 215 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Tor1aip1Q921T2 595 aaKnown RBP20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 DonsonQ9QXP4 560 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Ltbp2O08999 1813 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Kcnb1Q03717 857 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Lrrc43Q3V0L5 667 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Cep112Q5PR68 954 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Arid3aQ62431 601 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Fbxo18Q8K2I9 1042 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Onecut3Q8K557 490 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Atp1a1Q8VDN2 1023 aaKnown RBP20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 March8Q9DBD2 286 aa20.6■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Otud7bB2RUR8 840 aa20.59■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Man1a2P39098 641 aa20.59■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Irak1Q62406 710 aa20.59■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Tmem179Q8BHH9 233 aa20.59■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 MmeQ61391 750 aa20.59■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Mxd3Q80US8 206 aa20.59■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 ByslO54825 436 aaKnown RBP20.58■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Rfc1P35601 1131 aa20.58■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Arhgef19Q8BWA8 802 aa20.58■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Sel1lQ9Z2G6 790 aa20.58■□□□□ 0.89
Ccdc3-201ENSMUST00000027988 Tsc2Q61037 1814 aa20.58■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Nme9A0A1L1SUL6 329 aa20.58■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Chrna9G3X8Z7 479 aa20.58■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Tmem35bQ3U0Y2 150 aa20.58■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Lrrc55Q3UY51 311 aa20.58■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 HibadhQ99L13 335 aaKnown RBP20.58■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Frmpd4A2AFR3 1320 aa20.58■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Gm30191A0A0U1RNT7 187 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Lilrb3P97484 841 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 ItgadQ3V0T4 1168 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Asic1Q6NXK8 526 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Sgsm1Q8BPQ7 1093 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Ppp2r5dQ91V89 594 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 AdarQ99MU3 1178 aaKnown RBP20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Chd5A2A8L1 1946 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 VrtnQ3SYK4 740 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Prpf38aQ4FK66 312 aaKnown RBP20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Tnni3kQ5GIG6 834 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Atxn2lQ7TQH0 1049 aaKnown RBP20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Nek5Q7TSC3 627 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Heg1E9Q7X6 1337 aa20.57■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Zfyve9A2A8R0 1397 aa20.56■□□□□ 0.88
Ccdc3-201ENSMUST00000027988 Kif13bA0A286YCV9 1847 aa20.56■□□□□ 0.88
Retrieved 100 of 22,080 RNA–protein pairs in 17.9 ms