RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W MRC1P25588 1096 aa0.97□□□□□ -2.25
PRP42YDR235W YIM1P28625 365 aa0.97□□□□□ -2.25
PRP42YDR235W ECM15P35195 104 aa0.97□□□□□ -2.25
PRP42YDR235W YIL161WP40449 235 aaKnown RBP0.97□□□□□ -2.25
PRP42YDR235W CTF18P49956 741 aa0.97□□□□□ -2.25
PRP42YDR235W YGL082WP53155 381 aa0.97□□□□□ -2.25
PRP42YDR235W NNF2P53253 936 aa0.97□□□□□ -2.25
PRP42YDR235W BTN2P53286 410 aa0.97□□□□□ -2.25
PRP42YDR235W WSC2P53832 503 aa0.97□□□□□ -2.25
PRP42YDR235W ATG26Q06321 1198 aa0.97□□□□□ -2.25
PRP42YDR235W VAM6Q07468 1049 aa0.97□□□□□ -2.25
PRP42YDR235W THI20Q08224 551 aa0.97□□□□□ -2.25
PRP42YDR235W YOR387CQ08910 206 aa0.97□□□□□ -2.25
PRP42YDR235W PDH1Q12428 516 aaKnown RBP0.97□□□□□ -2.25
PRP42YDR235W RRP12Q12754 1228 aaKnown RBP0.97□□□□□ -2.25
PRP42YDR235W YER078W-AQ3E7A2 54 aa0.97□□□□□ -2.25
PRP42YDR235W SEC62P21825 274 aa0.96□□□□□ -2.26
PRP42YDR235W NAM9P27929 486 aa0.96□□□□□ -2.26
PRP42YDR235W SAC6P32599 642 aaKnown RBP0.96□□□□□ -2.26
PRP42YDR235W GRX4P32642 244 aa0.96□□□□□ -2.26
PRP42YDR235W YME1P32795 747 aa0.96□□□□□ -2.26
PRP42YDR235W YNK1P36010 153 aaKnown RBP0.96□□□□□ -2.26
PRP42YDR235W FSH1P38777 243 aaKnown RBP0.96□□□□□ -2.26
PRP42YDR235W SAM50P53969 484 aa0.96□□□□□ -2.26
PRP42YDR235W DOS2P54858 310 aa0.96□□□□□ -2.26
PRP42YDR235W DIC1Q06143 298 aa0.96□□□□□ -2.26
PRP42YDR235W YOL057WQ08225 711 aa0.96□□□□□ -2.26
PRP42YDR235W HNT3Q08702 217 aa0.96□□□□□ -2.26
PRP42YDR235W RRP6Q12149 733 aaKnown RBP0.96□□□□□ -2.26
PRP42YDR235W SPT15P13393 240 aaKnown RBP0.95□□□□□ -2.26
PRP42YDR235W SPO16P17122 198 aa0.95□□□□□ -2.26
PRP42YDR235W RER1P25560 188 aa0.95□□□□□ -2.26
PRP42YDR235W CMK1P27466 446 aaKnown RBP0.95□□□□□ -2.26
PRP42YDR235W VPS17P32913 551 aa0.95□□□□□ -2.26
PRP42YDR235W PMU1P36069 295 aa0.95□□□□□ -2.26
PRP42YDR235W TUL1P36096 758 aa0.95□□□□□ -2.26
PRP42YDR235W ESL2P36168 1195 aa0.95□□□□□ -2.26
PRP42YDR235W SWD3P38123 315 aa0.95□□□□□ -2.26
PRP42YDR235W UBA4P38820 440 aa0.95□□□□□ -2.26
PRP42YDR235W MSO1P53604 210 aaKnown RBP0.95□□□□□ -2.26
PRP42YDR235W MOT3P54785 490 aaKnown RBP0.95□□□□□ -2.26
PRP42YDR235W CSR1Q06705 408 aaKnown RBP0.95□□□□□ -2.26
PRP42YDR235W SNF3P10870 884 aa0.94□□□□□ -2.26
PRP42YDR235W PGS1P25578 521 aa0.94□□□□□ -2.26
PRP42YDR235W SNC1P31109 117 aa0.94□□□□□ -2.26
PRP42YDR235W DEG1P31115 442 aaKnown RBP0.94□□□□□ -2.26
PRP42YDR235W APM3P38153 483 aa0.94□□□□□ -2.26
PRP42YDR235W YBR138CP38277 524 aa0.94□□□□□ -2.26
PRP42YDR235W VPS52P39904 641 aa0.94□□□□□ -2.26
PRP42YDR235W YGR210CP42942 411 aa0.94□□□□□ -2.26
PRP42YDR235W CPR6P53691 371 aaKnown RBP0.94□□□□□ -2.26
PRP42YDR235W FOL1P53848 824 aa0.94□□□□□ -2.26
PRP42YDR235W SSK1Q07084 712 aa0.94□□□□□ -2.26
PRP42YDR235W ENT4Q07872 247 aa0.94□□□□□ -2.26
PRP42YDR235W TMS1Q12116 473 aa0.94□□□□□ -2.26
PRP42YDR235W YOL114CQ12322 202 aa0.94□□□□□ -2.26
PRP42YDR235W HRT3Q12347 344 aa0.94□□□□□ -2.26
PRP42YDR235W ATP2P00830 511 aaKnown RBP0.93□□□□□ -2.26
PRP42YDR235W MIS1P09440 975 aaKnown RBP0.93□□□□□ -2.26
PRP42YDR235W ATR1P13090 542 aa0.93□□□□□ -2.26
PRP42YDR235W RNA14P25298 677 aaKnown RBP0.93□□□□□ -2.26
PRP42YDR235W YCR022CP25620 114 aa0.93□□□□□ -2.26
PRP42YDR235W FUN19P28003 413 aaPredicted RBP0.93□□□□□ -2.26
PRP42YDR235W NPR2P39923 615 aa0.93□□□□□ -2.26
PRP42YDR235W PKP1P40530 394 aa0.93□□□□□ -2.26
PRP42YDR235W IST1P53843 298 aaPredicted RBP0.93□□□□□ -2.26
PRP42YDR235W TEP1P53916 434 aa0.93□□□□□ -2.26
PRP42YDR235W RRG7Q08774 242 aaPredicted RBP0.93□□□□□ -2.26
PRP42YDR235W ATG9Q12142 997 aa0.93□□□□□ -2.26
PRP42YDR235W RBD2Q12270 262 aa0.93□□□□□ -2.26
PRP42YDR235W PIF1P07271 859 aa0.93□□□□□ -2.26
PRP42YDR235W CLN3P13365 580 aa0.93□□□□□ -2.26
PRP42YDR235W PUT3P25502 979 aaPredicted RBP0.93□□□□□ -2.26
PRP42YDR235W SRB5P32585 307 aa0.93□□□□□ -2.26
PRP42YDR235W YBL059WP34224 193 aa0.93□□□□□ -2.26
PRP42YDR235W PAF1P38351 445 aa0.93□□□□□ -2.26
PRP42YDR235W NDT80P38830 627 aa0.93□□□□□ -2.26
PRP42YDR235W SPC72P39723 622 aa0.93□□□□□ -2.26
PRP42YDR235W YVH1Q02256 364 aaKnown RBP0.93□□□□□ -2.26
PRP42YDR235W RLI1Q03195 608 aaKnown RBP0.93□□□□□ -2.26
PRP42YDR235W TRS130Q03660 1102 aa0.93□□□□□ -2.26
PRP42YDR235W APL4Q12028 832 aa0.93□□□□□ -2.26
PRP42YDR235W ERV2Q12284 196 aa0.93□□□□□ -2.26
PRP42YDR235W CAR1P00812 333 aaKnown RBP0.92□□□□□ -2.26
PRP42YDR235W SSB1P11484 613 aaKnown RBP0.92□□□□□ -2.26
PRP42YDR235W LCB1P25045 558 aaKnown RBP0.92□□□□□ -2.26
PRP42YDR235W TFC3P34111 1160 aa0.92□□□□□ -2.26
PRP42YDR235W NUP120P35729 1037 aa0.92□□□□□ -2.26
PRP42YDR235W LAG1P38703 411 aa0.92□□□□□ -2.26
PRP42YDR235W ANS1P38832 159 aa0.92□□□□□ -2.26
PRP42YDR235W SSB2P40150 613 aaKnown RBP0.92□□□□□ -2.26
PRP42YDR235W ALG8P40351 577 aa0.92□□□□□ -2.26
PRP42YDR235W SMC3P47037 1230 aa0.92□□□□□ -2.26
PRP42YDR235W STR3P53101 465 aaKnown RBP0.92□□□□□ -2.26
PRP42YDR235W CSL4P53859 292 aaPredicted RBP0.92□□□□□ -2.26
PRP42YDR235W INN1P53901 409 aa0.92□□□□□ -2.26
PRP42YDR235W YPL014WQ02606 381 aa0.92□□□□□ -2.26
PRP42YDR235W ELP3Q02908 557 aaKnown RBP0.92□□□□□ -2.26
PRP42YDR235W BRE1Q07457 700 aaKnown RBP0.92□□□□□ -2.26
PRP42YDR235W HXK2P04807 486 aaKnown RBP0.91□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 32.1 ms