RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RAVER2Q9HCJ3 691 aaKnown RBP15.83■□□□□ 0.13
LINC00540-202ENST00000616974 RABGAP1Q9Y3P9 1069 aa15.83■□□□□ 0.13
LINC00540-202ENST00000616974 ZNF536O15090 1300 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 TNPO2O14787 897 aaKnown RBP15.83■□□□□ 0.12
LINC00540-202ENST00000616974 ZNF543Q08ER8 600 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 TMEM67Q5HYA8 995 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 ANKS1AQ92625 1134 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 TTC14Q96N46 770 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 LARP6Q9BRS8 491 aaKnown RBP15.83■□□□□ 0.12
LINC00540-202ENST00000616974 KAT14Q9H8E8 782 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 HOXC10Q9NYD6 342 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 PRR12Q9ULL5 1215 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 PTPN22Q9Y2R2 807 aa15.83■□□□□ 0.12
LINC00540-202ENST00000616974 PDE4DIPQ5VU43 2346 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 SH2B2O14492 632 aaPredicted RBP15.82■□□□□ 0.12
LINC00540-202ENST00000616974 DTNBO60941 627 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 ELNP15502 786 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 ERCC3P19447 782 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 FLT3LGP49771 235 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 STAT2P52630 851 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 IKQ13123 557 aaPredicted RBP15.82■□□□□ 0.12
LINC00540-202ENST00000616974 GPR142Q7Z601 462 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 CCDC144CPQ8IYA2 1237 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 CMTR1Q8N1G2 835 aaKnown RBP15.82■□□□□ 0.12
LINC00540-202ENST00000616974 AGBL1Q96MI9 1066 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 JAKMIP1Q96N16 626 aaKnown RBP15.82■□□□□ 0.12
LINC00540-202ENST00000616974 NEK1Q96PY6 1258 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 GJD2Q9UKL4 321 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 DDX49Q9Y6V7 483 aaKnown RBP15.82■□□□□ 0.12
LINC00540-202ENST00000616974 REC8O95072 547 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 EXOSC10Q01780 885 aaKnown RBP15.82■□□□□ 0.12
LINC00540-202ENST00000616974 TRIM32Q13049 653 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 CCDC174Q6PII3 467 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 UPF3BQ9BZI7 483 aaKnown RBP15.82■□□□□ 0.12
LINC00540-202ENST00000616974 SLC38A10Q9HBR0 1119 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 HOMER2Q9NSB8 354 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 SRRDQ9UH36 339 aa15.82■□□□□ 0.12
LINC00540-202ENST00000616974 MYPNQ86TC9 1320 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 LAMA3Q16787 3333 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 TROAPQ12815 778 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 WTAPQ15007 396 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 CCL14Q16627 93 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 TSGA10IPQ3SY00 556 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 PRPF38AQ8NAV1 312 aaKnown RBP15.81■□□□□ 0.12
LINC00540-202ENST00000616974 MAD2L2Q9UI95 211 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 HPS5Q9UPZ3 1129 aa15.81■□□□□ 0.12
LINC00540-202ENST00000616974 MCM5P33992 734 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 FCGRTP55899 365 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 SNRNP48Q6IEG0 339 aaKnown RBP15.8■□□□□ 0.12
LINC00540-202ENST00000616974 DCAF4Q8WV16 495 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 FEM1BQ9UK73 627 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 BRPF3Q9ULD4 1205 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 CAPN15O75808 1086 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 NCAPG2Q86XI2 1143 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 ABHD8Q96I13 439 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 FLRT1Q9NZU1 646 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 SYNPO2Q9UMS6 1093 aa15.8■□□□□ 0.12
LINC00540-202ENST00000616974 PGK2P07205 417 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 CASTP20810 708 aaKnown RBP15.79■□□□□ 0.12
LINC00540-202ENST00000616974 CYP2B6P20813 491 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 KIF22Q14807 665 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 RNF20Q5VTR2 975 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 VAT1LQ9HCJ6 419 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 CYTH3O43739 400 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 PPFIA3O75145 1194 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 STAT3P40763 770 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 FBXO46Q6PJ61 603 aaPredicted RBP15.79■□□□□ 0.12
LINC00540-202ENST00000616974 NUP133Q8WUM0 1156 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 PIBF1Q8WXW3 757 aa15.79■□□□□ 0.12
LINC00540-202ENST00000616974 PURBQ96QR8 312 aaKnown RBP15.79■□□□□ 0.12
LINC00540-202ENST00000616974 COBLO75128 1261 aa15.78■□□□□ 0.12
LINC00540-202ENST00000616974 ZKSCAN1P17029 563 aaPredicted RBP15.78■□□□□ 0.12
LINC00540-202ENST00000616974 MTFR1Q15390 333 aa15.78■□□□□ 0.12
LINC00540-202ENST00000616974 MUM1L1Q5H9M0 696 aa15.78■□□□□ 0.12
LINC00540-202ENST00000616974 SYDE2Q5VT97 1194 aa15.78■□□□□ 0.12
LINC00540-202ENST00000616974 ZNF654Q8IZM8 581 aa15.78■□□□□ 0.12
LINC00540-202ENST00000616974 NPLOC4Q8TAT6 608 aa15.78■□□□□ 0.12
LINC00540-202ENST00000616974 hCG_1642624A0A1W2PR95 340 aa15.77■□□□□ 0.12
LINC00540-202ENST00000616974 PLEKHA8P1O95397 391 aa15.77■□□□□ 0.12
LINC00540-202ENST00000616974 MORN1Q5T089 497 aa15.77■□□□□ 0.12
LINC00540-202ENST00000616974 BTNL9Q6UXG8 535 aa15.77■□□□□ 0.12
LINC00540-202ENST00000616974 DHX32Q7L7V1 743 aaKnown RBP15.77■□□□□ 0.12
LINC00540-202ENST00000616974 ADGRF4Q8IZF3 695 aa15.77■□□□□ 0.12
LINC00540-202ENST00000616974 USP6NLQ92738 828 aa15.77■□□□□ 0.12
LINC00540-202ENST00000616974 PPP1R11O60927 126 aaPredicted RBP15.77■□□□□ 0.11
LINC00540-202ENST00000616974 APOBRQ0VD83 1088 aa15.77■□□□□ 0.11
LINC00540-202ENST00000616974 Q6ZUG5 572 aa15.77■□□□□ 0.11
LINC00540-202ENST00000616974 PLEKHH3Q7Z736 793 aa15.77■□□□□ 0.11
LINC00540-202ENST00000616974 MICU3Q86XE3 530 aa15.77■□□□□ 0.11
LINC00540-202ENST00000616974 TRIB2Q92519 343 aa15.77■□□□□ 0.11
LINC00540-202ENST00000616974 PALM3A6NDB9 673 aaPredicted RBP15.76■□□□□ 0.11
LINC00540-202ENST00000616974 PARP1P09874 1014 aaKnown RBP15.76■□□□□ 0.11
LINC00540-202ENST00000616974 ADORA2AP29274 412 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 RIOX2Q8IUF8 465 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 CCDC82Q8N4S0 544 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 MB21D1Q8N884 522 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 TEX13BQ9BXU2 312 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 RANBP17Q9H2T7 1088 aaKnown RBP15.76■□□□□ 0.11
LINC00540-202ENST00000616974 JMJD4Q9H9V9 463 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 ERICH2A1L162 156 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms