RNA–Protein interactions for RNA: ENST00000616122.4

SYNCRIP-204, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,764 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-204ENST00000616122 TMCO5BA8MYB1 307 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 CCNT1O60563 726 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 RPN1P04843 607 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 CCNE1P24864 410 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 TRAF1Q13077 416 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 MORC3Q14149 939 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 RIOK1Q9BRS2 568 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 DDX41Q9UJV9 622 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 CAPN2P17655 700 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 EEF1GP26641 437 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 TECP42680 631 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 NT5C2P49902 561 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 ADCY7P51828 1080 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 FMR1Q06787 632 aaKnown RBP eCLIP6.3□□□□□ -1.41e-6■■■■□ 26.5
SYNCRIP-204ENST00000616122 TXNRD3Q86VQ6 643 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 LRRC47Q8N1G4 583 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 NEK11Q8NG66 645 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 GDAP1L1Q96MZ0 367 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 USP21Q9UK80 565 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 PCDHA12Q9UN75 941 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 ADGRG1Q9Y653 693 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 ORC4O43929 436 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 MCM3P25205 808 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 CKAP4Q07065 602 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 KRT31Q15323 416 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 NYAP1Q6ZVC0 841 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 VGLL2Q8N8G2 317 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 SLC39A2Q9NP94 309 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 SEPT11Q9NVA2 429 aaKnown RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 BIN2Q9UBW5 565 aaPredicted RBP6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 PCDHA1Q9Y5I3 950 aa6.3□□□□□ -1.4
SYNCRIP-204ENST00000616122 SMIM22K7EJ46 135 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 CDR1P51861 262 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 NFIXQ14938 502 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 KMT5BQ4FZB7 885 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 C2CD5Q86YS7 1000 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 SRBD1Q8N5C6 995 aaKnown RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 SERPINB2P05120 415 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 PFKFB3Q16875 520 aaPredicted RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 TAF3Q5VWG9 929 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 DPP8Q6V1X1 898 aaPredicted RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 SLC35F6Q8N357 371 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 NEDD1Q8NHV4 660 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 CUL5Q93034 780 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 CD209Q9NNX6 404 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 SAR1BQ9Y6B6 198 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 MROH7-TTC4A0A0A0MT08 1334 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 WTIPA6NIX2 430 aaPredicted RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 PP2D1A8MPX8 630 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 CLCN6P51797 869 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 FKBP3Q00688 224 aaKnown RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 MTF1Q14872 753 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 C12orf60Q5U649 245 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 NELFCDQ8IXH7 590 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 TBCKQ8TEA7 893 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 WDR24Q96S15 920 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 H0YHG0 523 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 CTIFO43310 598 aaKnown RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 ATP2B4P23634 1241 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 RDXP35241 583 aaKnown RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 CETN1Q12798 172 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 TCP10Q12799 353 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 ZFYVE27Q5T4F4 411 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 ACRBPQ8NEB7 543 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 FOXP2O15409 715 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 USP8P40818 1118 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 TOB1P50616 345 aaPredicted RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 VAV2P52735 878 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 ATP2C1P98194 919 aaPredicted RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 TUBB2AQ13885 445 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 SMC1AQ14683 1233 aaKnown RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 SEC23AQ15436 765 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 ARHGEF1Q92888 912 aaKnown RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 GPR101Q96P66 508 aaPredicted RBP6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 PIGSQ96S52 555 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 TUBB2BQ9BVA1 445 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 NUP58Q9BVL2 599 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 GLT8D2Q9H1C3 349 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 L2HGDHQ9H9P8 463 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 DISC1Q9NRI5 854 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 USP40Q9NVE5 1235 aa6.29□□□□□ -1.4
SYNCRIP-204ENST00000616122 SCNN1DP51172 638 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 RBL2Q08999 1139 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 CALCRLQ16602 461 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 FBXO33Q7Z6M2 555 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 CCDC65Q8IXS2 484 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 IFIH1Q9BYX4 1025 aaKnown RBP6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 ADD3Q9UEY8 706 aaKnown RBP6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 PCDHA4Q9UN74 947 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 THRAP3Q9Y2W1 955 aaKnown RBP6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 SOWAHDA6NJG2 315 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 MFAP3LO75121 409 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 FXR1P51114 621 aaKnown RBP eCLIP6.28□□□□□ -1.44e-7■■■■□ 19.8
SYNCRIP-204ENST00000616122 GRAPQ13588 217 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 LONRF2Q1L5Z9 754 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 RRAGAQ7L523 313 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 GRAPLQ8TC17 118 aaPredicted RBP6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 AK8Q96MA6 479 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 PRM3Q9NNZ6 103 aa6.28□□□□□ -1.4
SYNCRIP-204ENST00000616122 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms