RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 FBXO28Q9NVF7 368 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 PAG1Q9NWQ8 432 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 SLC4A4Q9Y6R1 1079 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 RLFQ13129 1914 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 USP17L12C9JPN9 530 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 USP17L21D6R901 530 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 PRKAB2O43741 272 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 ZBED4O75132 1171 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 TAL1P17542 331 aaPredicted RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 GUCY1A2P33402 732 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 COPB2P35606 906 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 CDK8P49336 464 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 RRP1P56182 461 aaKnown RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 EVX2Q03828 476 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 PPIGQ13427 754 aaKnown RBP eCLIP6.21□□□□□ -1.42
VRK3-226ENST00000602029 AAMPQ13685 434 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 TMEM132BQ14DG7 1078 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 CEP85Q6P2H3 762 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 TMED8Q6PL24 325 aaPredicted RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 ABRAQ8N0Z2 381 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 ANKRD35Q8N283 1001 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 RHPN1Q8TCX5 695 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 ADAMTS19Q8TE59 1207 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 KIFC2Q96AC6 838 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 TIFAQ96CG3 184 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 KIF1BPQ96EK5 621 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 GLT1D1Q96MS3 346 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 NUP88Q99567 741 aaPredicted RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 SLF1Q9BQI6 1058 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 MTIF3Q9H2K0 278 aaKnown RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 KANSL2Q9H9L4 492 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 ATP8A2Q9NTI2 1148 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 CHD7Q9P2D1 2997 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 MSRAQ9UJ68 235 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 FAM184BQ9ULE4 1060 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 PHF24Q9UPV7 400 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 MTMR7Q9Y216 660 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 NOP58Q9Y2X3 529 aaKnown RBP6.21□□□□□ -1.42
VRK3-226ENST00000602029 TMX2Q9Y320 296 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 CFAP54Q96N23 3096 aa6.21□□□□□ -1.42
VRK3-226ENST00000602029 CHD9Q3L8U1 2897 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 USP34Q70CQ2 3546 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 ZDBF2Q9HCK1 2354 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 ZBBXA8MT70 800 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 VWA5AO00534 786 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 MS4A1P11836 297 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 TDO2P48775 406 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 ACLYP53396 1101 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 CHMP4BP1P59074 171 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 GRIN2CQ14957 1233 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 KCNA10Q16322 511 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 SLFNL1Q499Z3 407 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 GNASQ5JWF2 1037 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 KIAA1755Q5JYT7 1200 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 ZSCAN25Q6NSZ9 544 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 RIOX2Q8IUF8 465 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 TMEM199Q8N511 208 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 PCSK9Q8NBP7 692 aaKnown RBP6.2□□□□□ -1.42
VRK3-226ENST00000602029 GPATCH3Q96I76 525 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 CCDC136Q96JN2 1154 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 LRFN3Q9BTN0 628 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 TEX13BQ9BXU2 312 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 TSPYL2Q9H2G4 693 aaPredicted RBP6.2□□□□□ -1.42
VRK3-226ENST00000602029 PRDM12Q9H4Q4 367 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 ZNF576Q9H609 170 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 EPHX3Q9H6B9 360 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 RAVER2Q9HCJ3 691 aaKnown RBP6.2□□□□□ -1.42
VRK3-226ENST00000602029 NRBP1Q9UHY1 535 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 RCAN3Q9UKA8 241 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 PPP1R9AQ9ULJ8 1098 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 MROH7Q68CQ1 1323 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 SYNRGQ9UMZ2 1314 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 SIPA1L1O43166 1804 aa6.2□□□□□ -1.42
VRK3-226ENST00000602029 A0A0U1RQG5 324 aaPredicted RBP6.19□□□□□ -1.42
VRK3-226ENST00000602029 GRXCR1A8MXD5 290 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 ACRP10323 421 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 RLBP1P12271 317 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 ITGB8P26012 769 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 EPHB4P54760 987 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 GABPAQ06546 454 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 PSRC1Q6PGN9 363 aaPredicted RBP6.19□□□□□ -1.42
VRK3-226ENST00000602029 ZNF444Q8N0Y2 327 aaPredicted RBP6.19□□□□□ -1.42
VRK3-226ENST00000602029 UHRF1Q96T88 793 aaPredicted RBP6.19□□□□□ -1.42
VRK3-226ENST00000602029 AP5M1Q9H0R1 490 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 CHMP4BQ9H444 224 aaKnown RBP6.19□□□□□ -1.42
VRK3-226ENST00000602029 SLC28A3Q9HAS3 691 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 ZNF287Q9HBT7 754 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 ARPP21Q9UBL0 812 aaPredicted RBP6.19□□□□□ -1.42
VRK3-226ENST00000602029 CLIP2Q9UDT6 1046 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 BRWD1Q9NSI6 2320 aa6.19□□□□□ -1.42
VRK3-226ENST00000602029 SPTBN4Q9H254 2564 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 NAV1Q8NEY1 1877 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 MOXD2PA6NHM9 499 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 KIAA0355O15063 1070 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 ZEB2O60315 1214 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 RAB11FIP3O75154 756 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 PRDM1O75626 825 aa6.18□□□□□ -1.42
VRK3-226ENST00000602029 TIMP1P01033 207 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms