RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SH3RF1	Q7Z6J0	888 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	IFNL3	Q8IZI9	196 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	PRPF38A	Q8NAV1	312 aa	Known RBP	12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	FSD1	Q9BTV5	496 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	RAVER2	Q9HCJ3	691 aa	Known RBP	12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	PDLIM7	Q9NR12	457 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	MTMR4	Q9NYA4	1195 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	NRBP1	Q9UHY1	535 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	PHF24	Q9UPV7	400 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	DIS3	Q9Y2L1	958 aa	Known RBP	12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	TTC41P	Q6P2S7	1318 aa		12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	MYH4	Q9Y623	1939 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	DNAJC25-GNG10	A0A024R161	153 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	TRIM43B	A6NCK2	446 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	TLE2	Q04725	743 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	BAD	Q92934	168 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	TRIM43	Q96BQ3	446 aa	Predicted RBP	12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	CHMP4C	Q96CF2	233 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	DDX11	Q96FC9	970 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	ZNF287	Q9HBT7	754 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	CNPY2	Q9Y2B0	182 aa		12.55	□□□□□ -0.4
LSM4-205	ENST00000597776	SMCHD1	A6NHR9	2005 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776		A0A1W2PQ45	241 aa	Predicted RBP	12.54	□□□□□ -0.4
LSM4-205	ENST00000597776		A0A1W2PQY0	241 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	ERC2	O15083	957 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	ZBED4	O75132	1171 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	SNAI1	O95863	264 aa	Predicted RBP	12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	TTLL1	O95922	423 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	TSPY3	P0CV98	308 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	TSPY8	P0CW00	308 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	AKR1A1	P14550	325 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	PPARA	Q07869	468 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	SHH	Q15465	462 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	LRRFIP1	Q32MZ4	808 aa	Known RBP	12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	ZMYM1	Q5SVZ6	1142 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	C9orf50	Q5SZB4	431 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	SLFN13	Q68D06	897 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	CCDC129	Q6ZRS4	1044 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	RNF180	Q86T96	592 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	GMCL1P1	Q8NEA9	526 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	MKL1	Q969V6	931 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	FAM161B	Q96MY7	647 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	NACAP1	Q9BZK3	213 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	NAPB	Q9H115	298 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	SLC38A10	Q9HBR0	1119 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	FEM1B	Q9UK73	627 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	ZHX1	Q9UKY1	873 aa	Predicted RBP	12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	ISY1	Q9ULR0	285 aa	Known RBP	12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	STXBP5L	Q9Y2K9	1186 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	CTDP1	Q9Y5B0	961 aa	Predicted RBP	12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	SYNRG	Q9UMZ2	1314 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	PLIN4	Q96Q06	1357 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	UNC80	Q8N2C7	3258 aa		12.54	□□□□□ -0.4
LSM4-205	ENST00000597776	EYS	Q5T1H1	3165 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	ATP2A1	O14983	1001 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	FOXP2	O15409	715 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	PQBP1	O60828	265 aa	Known RBP	12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	ADAMTS4	O75173	837 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	MX1	P20591	662 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	ITGB8	P26012	769 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	IRX5	P78411	483 aa	Predicted RBP	12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	TFAP4	Q01664	338 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	PDE4B	Q07343	736 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	C1orf53	Q5VUE5	145 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	NEDD1	Q8NHV4	660 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	FGD4	Q96M96	766 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	INCENP	Q9NQS7	918 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	HOMER2	Q9NSB8	354 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	SYNGAP1	Q96PV0	1343 aa		12.53	□□□□□ -0.4
LSM4-205	ENST00000597776	MYADML2	A6NDP7	307 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	POTEB2	H3BUK9	544 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	DLL1	O00548	723 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	ADCY6	O43306	1168 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	BMP3	P12645	472 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	MAMDC4	Q6UXC1	1216 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	RASGRP2	Q7LDG7	609 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	ANKRD35	Q8N283	1001 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	MSL3	Q8N5Y2	521 aa	Known RBP	12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	GUCD1	Q96NT3	240 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	FAM184B	Q9ULE4	1060 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	SYNPO2	Q9UMS6	1093 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	SALL3	Q9BXA9	1300 aa		12.52	□□□□□ -0.41
LSM4-205	ENST00000597776	TMEM232	C9JQI7	657 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	NMT2	O60551	498 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	SLC3A2	P08195	630 aa	Known RBP	12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	CLTB	P09497	229 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	ACLY	P53396	1101 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	EPHB4	P54760	987 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	RRP1	P56182	461 aa	Known RBP	12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	SNAP25	P60880	206 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	CTDSPL2	Q05D32	466 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	IK	Q13123	557 aa	Predicted RBP	12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	ACVR2B	Q13705	512 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	VPS53	Q5VIR6	699 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	FAM109B	Q6ICB4	259 aa	Predicted RBP	12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	KLHDC9	Q8NEP7	349 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	CRBN	Q96SW2	442 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	12.51	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms