RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 TRDNQ13061 729 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 AAK1Q2M2I8 961 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 LHX8Q68G74 356 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 MIGA2Q7L4E1 593 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 ANKRD13CQ8N6S4 541 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 IGDCC4Q8TDY8 1250 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 TRIB2Q92519 343 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 TIFAQ96CG3 184 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.1□□□□□ -0.63
TRIM28-208ENST00000597172 LRRC2Q9BYS8 371 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 MKNK2Q9HBH9 465 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 GPHNQ9NQX3 736 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-208ENST00000597172 TOMM22Q9NS69 142 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 PDRG1Q9NUG6 133 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 SWAP70Q9UH65 585 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 EPG5Q9HCE0 2579 aa11.1□□□□□ -0.63
TRIM28-208ENST00000597172 SIPA1L1O43166 1804 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 LTBP2Q14767 1821 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 LAMA4Q16363 1823 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 RIF1Q5UIP0 2472 aaKnown RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 TPRP12270 2363 aaKnown RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 PRC1O43663 620 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 JAG1P78504 1218 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 TFAP4Q01664 338 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 TOB2Q14106 344 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 Q6ZUG5 572 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 RALYLQ86SE5 291 aaKnown RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 ZNF444Q8N0Y2 327 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 FBXL16Q8N461 479 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 CRACR2BQ8N4Y2 399 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 ESR2Q92731 530 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 AGXT2Q9BYV1 514 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 PRDM12Q9H4Q4 367 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 PRDM5Q9NQX1 630 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 IL17RBQ9NRM6 502 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 HERC5Q9UII4 1024 aaKnown RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 SLC45A1Q9Y2W3 748 aa11.09□□□□□ -0.63
TRIM28-208ENST00000597172 ZFHX2Q9C0A1 2572 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-208ENST00000597172 PHF20L1A8MW92 1017 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 NMT2O60551 498 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 AKR1B1P15121 316 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 IGFBP4P22692 258 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 AK2P54819 239 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 TFF2Q03403 129 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 SHROOM1Q2M3G4 852 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-208ENST00000597172 GADL1Q6ZQY3 521 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 NEDD1Q8NHV4 660 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 SNX21Q969T3 373 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 ZKSCAN3Q9BRR0 538 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 LARP6Q9BRS8 491 aaKnown RBP11.08□□□□□ -0.64
TRIM28-208ENST00000597172 ZNF287Q9HBT7 754 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 SENP2Q9HC62 589 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 TCP11L1Q9NUJ3 509 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 ATP11BQ9Y2G3 1177 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 BRWD1Q9NSI6 2320 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 WDR19Q8NEZ3 1342 aa11.08□□□□□ -0.64
TRIM28-208ENST00000597172 IGKV6D-41A0A0C4DH26 115 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 A0A0G2JLL6 359 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-208ENST00000597172 TSPY2A6NKD2 308 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 CYP2B6P20813 491 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 NT5C2P49902 561 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 KCNQ1P51787 676 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 ADGRE1Q14246 886 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 SEC23AQ15436 765 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 FAM110CQ1W6H9 321 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 CERKLQ49MI3 558 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-208ENST00000597172 RCSD1Q6JBY9 416 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 PRRT2Q7Z6L0 340 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-208ENST00000597172 TMEM87BQ96K49 555 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 ZSCAN10Q96SZ4 725 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-208ENST00000597172 MTA3Q9BTC8 594 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 TBC1D2Q9BYX2 928 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 ZNF112Q9UJU3 913 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 CFAP54Q96N23 3096 aa11.07□□□□□ -0.64
TRIM28-208ENST00000597172 PRRC2BQ5JSZ5 2229 aaKnown RBP11.07□□□□□ -0.64
TRIM28-208ENST00000597172 SH2B2O14492 632 aaPredicted RBP11.06□□□□□ -0.64
TRIM28-208ENST00000597172 IFIT3O14879 490 aaKnown RBP11.06□□□□□ -0.64
TRIM28-208ENST00000597172 ST18O60284 1047 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 TSPY3P0CV98 308 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 TSPY8P0CW00 308 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 CCND3P30281 292 aaPredicted RBP11.06□□□□□ -0.64
TRIM28-208ENST00000597172 GUCY1A2P33402 732 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 NOVP48745 357 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 EVCP57679 992 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 CACNB2Q08289 660 aaPredicted RBP11.06□□□□□ -0.64
TRIM28-208ENST00000597172 NOL9Q5SY16 702 aaKnown RBP11.06□□□□□ -0.64
TRIM28-208ENST00000597172 ENAHQ8N8S7 591 aaPredicted RBP11.06□□□□□ -0.64
TRIM28-208ENST00000597172 ANKS1AQ92625 1134 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 KHSRPQ92945 711 aaKnown RBP eCLIP11.06□□□□□ -0.64
TRIM28-208ENST00000597172 BRF1Q92994 677 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 CCDC17Q96LX7 622 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 TRIM34Q9BYJ4 488 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 LY9Q9HBG7 655 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 BRPF3Q9ULD4 1205 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 TPCN1Q9ULQ1 816 aa11.06□□□□□ -0.64
TRIM28-208ENST00000597172 XIRP2A4UGR9 3374 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 PRR33A8MZF0 331 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms