RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 FOXP2O15409 715 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 ADCYAP1R1P41586 468 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 SHHQ15465 462 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 ZNF792Q3KQV3 632 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 CCDC136Q96JN2 1154 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.99■□□□□ 0.63
USHBP1-206ENST00000596436 FBXO28Q9NVF7 368 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 PPP1R9AQ9ULJ8 1098 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 SMCHD1A6NHR9 2005 aa18.99■□□□□ 0.63
USHBP1-206ENST00000596436 TRIM43BA6NCK2 446 aa18.98■□□□□ 0.63
USHBP1-206ENST00000596436 VWA5AO00534 786 aa18.98■□□□□ 0.63
USHBP1-206ENST00000596436 SDSP20132 328 aa18.98■□□□□ 0.63
USHBP1-206ENST00000596436 NMIQ13287 307 aaPredicted RBP18.98■□□□□ 0.63
USHBP1-206ENST00000596436 C9orf50Q5SZB4 431 aa18.98■□□□□ 0.63
USHBP1-206ENST00000596436 CTR9Q6PD62 1173 aa18.98■□□□□ 0.63
USHBP1-206ENST00000596436 TRIM43Q96BQ3 446 aaPredicted RBP18.98■□□□□ 0.63
USHBP1-206ENST00000596436 TINF2Q9BSI4 451 aa18.98■□□□□ 0.63
USHBP1-206ENST00000596436 ZNF865P0CJ78 1059 aaPredicted RBP18.97■□□□□ 0.63
USHBP1-206ENST00000596436 SH3RF1Q7Z6J0 888 aa18.97■□□□□ 0.63
USHBP1-206ENST00000596436 TICAM2Q86XR7 235 aa18.97■□□□□ 0.63
USHBP1-206ENST00000596436 AMOTL1Q8IY63 956 aa18.97■□□□□ 0.63
USHBP1-206ENST00000596436 BADQ92934 168 aa18.97■□□□□ 0.63
USHBP1-206ENST00000596436 MMP19Q99542 508 aa18.97■□□□□ 0.63
USHBP1-206ENST00000596436 XPNPEP3Q9NQH7 507 aa18.97■□□□□ 0.63
USHBP1-206ENST00000596436 HELLSQ9NRZ9 838 aa18.97■□□□□ 0.63
USHBP1-206ENST00000596436 PGK2P07205 417 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 GNAT2P19087 354 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 COPB2P35606 906 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 STAT3P40763 770 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 SMAD3P84022 425 aaKnown RBP18.96■□□□□ 0.63
USHBP1-206ENST00000596436 TLE2Q04725 743 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 SBK1Q52WX2 424 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 ZNF697Q5TEC3 545 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.96■□□□□ 0.63
USHBP1-206ENST00000596436 GOPCQ9HD26 462 aa18.96■□□□□ 0.63
USHBP1-206ENST00000596436 ARPP21Q9UBL0 812 aaPredicted RBP18.96■□□□□ 0.63
USHBP1-206ENST00000596436 ADAMTS4O75173 837 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 RARBP10826 455 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 TAL1P17542 331 aaPredicted RBP18.95■□□□□ 0.62
USHBP1-206ENST00000596436 KCTD2Q14681 263 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 VPS53Q5VIR6 699 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 GIMAP6Q6P9H5 292 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 ZNF589Q86UQ0 364 aaPredicted RBP18.95■□□□□ 0.62
USHBP1-206ENST00000596436 IFNL3Q8IZI9 196 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 MSL3Q8N5Y2 521 aaKnown RBP18.95■□□□□ 0.62
USHBP1-206ENST00000596436 FERMT2Q96AC1 680 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 DDRGK1Q96HY6 314 aa18.95■□□□□ 0.62
USHBP1-206ENST00000596436 PRDM5Q9NQX1 630 aaPredicted RBP18.95■□□□□ 0.62
USHBP1-206ENST00000596436 PATL2C9JE40 543 aaKnown RBP18.94■□□□□ 0.62
USHBP1-206ENST00000596436 KIAA0355O15063 1070 aa18.94■□□□□ 0.62
USHBP1-206ENST00000596436 ITGB8P26012 769 aa18.94■□□□□ 0.62
USHBP1-206ENST00000596436 MCMDC2Q4G0Z9 681 aa18.94■□□□□ 0.62
USHBP1-206ENST00000596436 FAM83BQ5T0W9 1011 aa18.94■□□□□ 0.62
USHBP1-206ENST00000596436 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.94■□□□□ 0.62
USHBP1-206ENST00000596436 RNF180Q86T96 592 aa18.94■□□□□ 0.62
USHBP1-206ENST00000596436 COL25A1Q9BXS0 654 aaPredicted RBP18.94■□□□□ 0.62
USHBP1-206ENST00000596436 TACC3Q9Y6A5 838 aa18.94■□□□□ 0.62
USHBP1-206ENST00000596436 DNAJC25-GNG10A0A024R161 153 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 A0A1W2PQ45 241 aaPredicted RBP18.93■□□□□ 0.62
USHBP1-206ENST00000596436 A0A1W2PQY0 241 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 ATP2A1O14983 1001 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 PGK1P00558 417 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 APPP05067 770 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 AKR1A1P14550 325 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 RASA1P20936 1047 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 TDO2P48775 406 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 MAMDC4Q6UXC1 1216 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 FAM161BQ96MY7 647 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 CDX2Q99626 313 aaPredicted RBP18.93■□□□□ 0.62
USHBP1-206ENST00000596436 TSEN34Q9BSV6 310 aaKnown RBP18.93■□□□□ 0.62
USHBP1-206ENST00000596436 SEMA6BQ9H3T3 888 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 NYAP2Q9P242 653 aa18.93■□□□□ 0.62
USHBP1-206ENST00000596436 IGKV6D-41A0A0C4DH26 115 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 MYCNP04198 464 aaPredicted RBP18.92■□□□□ 0.62
USHBP1-206ENST00000596436 CLTBP09497 229 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 SAMD1Q6SPF0 538 aaPredicted RBP18.92■□□□□ 0.62
USHBP1-206ENST00000596436 ANKRD33Q7Z3H0 272 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 TEX13BQ9BXU2 312 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 IL25Q9H293 177 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 TTYH1Q9H313 450 aaPredicted RBP18.92■□□□□ 0.62
USHBP1-206ENST00000596436 DIAPH3Q9NSV4 1193 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 CCDC171Q6TFL3 1326 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 SYNGAP1Q96PV0 1343 aa18.92■□□□□ 0.62
USHBP1-206ENST00000596436 MINDY4BA8MYZ0 360 aa18.91■□□□□ 0.62
USHBP1-206ENST00000596436 EPHB4P54760 987 aa18.91■□□□□ 0.62
USHBP1-206ENST00000596436 CCSAPQ6IQ19 270 aaPredicted RBP18.91■□□□□ 0.62
USHBP1-206ENST00000596436 CWC27Q6UX04 472 aaKnown RBP18.91■□□□□ 0.62
USHBP1-206ENST00000596436 ZNF467Q7Z7K2 595 aaPredicted RBP18.91■□□□□ 0.62
USHBP1-206ENST00000596436 KLHDC9Q8NEP7 349 aa18.91■□□□□ 0.62
USHBP1-206ENST00000596436 TOX2Q96NM4 488 aa18.91■□□□□ 0.62
USHBP1-206ENST00000596436 SLF1Q9BQI6 1058 aa18.91■□□□□ 0.62
USHBP1-206ENST00000596436 RIPK3Q9Y572 518 aa18.91■□□□□ 0.62
USHBP1-206ENST00000596436 CHD9Q3L8U1 2897 aa18.91■□□□□ 0.62
USHBP1-206ENST00000596436 MYH4Q9Y623 1939 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 TMEM265A0A087WTH1 108 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 F5H6K3 240 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 SNAI1O95863 264 aaPredicted RBP18.9■□□□□ 0.62
USHBP1-206ENST00000596436 NDUFB10O96000 172 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 KLRC3Q07444 240 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 ERICH6BQ5W0A0 696 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms