RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 LINC00116Q8NCU8 138 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 ENOX1Q8TC92 643 aaKnown RBP8.42□□□□□ -1.06
ZNF540-206ENST00000589117 PHF20Q9BVI0 1012 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 LAMB2P55268 1798 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 GOLGA6L9A6NEM1 432 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 TSPY2A6NKD2 308 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 BAG3O95817 575 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 GNAQP50148 359 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 MECOMQ03112 1051 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 TROAPQ12815 778 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 FAM98CQ17RN3 349 aaKnown RBP8.42□□□□□ -1.06
ZNF540-206ENST00000589117 CRTC2Q53ET0 693 aaPredicted RBP8.42□□□□□ -1.06
ZNF540-206ENST00000589117 TBC1D9BQ66K14 1250 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 FCHSD1Q86WN1 690 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 FAM174AQ8TBP5 190 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 WDR66Q8TBY9 1149 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 CELF1Q92879 486 aaKnown RBP8.42□□□□□ -1.06
ZNF540-206ENST00000589117 NGLY1Q96IV0 654 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 KCNK17Q96T54 332 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 TRMT1Q9NXH9 659 aaKnown RBP8.42□□□□□ -1.06
ZNF540-206ENST00000589117 PCDHB6Q9Y5E3 794 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 TACC3Q9Y6A5 838 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 CHD4Q14839 1912 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 PHLPP1O60346 1717 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 BCL9LQ86UU0 1499 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 LDHCP07864 332 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 SLFN14P0C7P3 912 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 NLRP5P59047 1200 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 DYNLL1P63167 89 aaKnown RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 ARID5BQ14865 1188 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 VPS72Q15906 364 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 DNAJC14Q6Y2X3 702 aaPredicted RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 HOMER1Q86YM7 354 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 CMTR1Q8N1G2 835 aaKnown RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 GSDMAQ96QA5 445 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 CTAGE1Q96RT6 745 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 DCP1AQ9NPI6 582 aaPredicted RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 FANCLQ9NW38 375 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 VPS54Q9P1Q0 977 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 CGNQ9P2M7 1197 aaKnown RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 SERTAD1Q9UHV2 236 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 ZNF831Q5JPB2 1677 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 TXLNAP40222 546 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 SARSP49591 514 aaKnown RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 SPECC1Q5M775 1068 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 TMTC3Q6ZXV5 915 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 VSTM4Q8IW00 320 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 FAM177A1Q8N128 213 aaPredicted RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 ANKRD7Q92527 254 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 CSRNP2Q9H175 543 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 KAT14Q9H8E8 782 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 IGSF5Q9NSI5 407 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 ANKIB1Q9P2G1 1089 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 MAN1B1Q9UKM7 699 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 NOVA2Q9UNW9 492 aaKnown RBP8.41□□□□□ -1.06
ZNF540-206ENST00000589117 LEMD3Q9Y2U8 911 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 BCORQ6W2J9 1755 aa8.41□□□□□ -1.06
ZNF540-206ENST00000589117 PRDM1O75626 825 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 LDHBP07195 334 aaKnown RBP8.4□□□□□ -1.06
ZNF540-206ENST00000589117 SCG2P13521 617 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 USP5P45974 858 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 SERPINB4P48594 390 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 MORC3Q14149 939 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 FILIP1LQ4L180 1135 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 ARMCX5Q6P1M9 558 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 DGKHQ86XP1 1220 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 FOXP4Q8IVH2 680 aaPredicted RBP8.4□□□□□ -1.06
ZNF540-206ENST00000589117 PDILTQ8N807 584 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 IQUBQ8NA54 791 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 FEZ1Q99689 392 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 MKNK2Q9HBH9 465 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 SH3GLB2Q9NR46 395 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 NFE2L3Q9Y4A8 694 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 NRAPQ86VF7 1730 aa8.4□□□□□ -1.06
ZNF540-206ENST00000589117 USP17L3A6NCW0 530 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L4A6NCW7 530 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 UBE2Q2LH0YL09 131 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 ARHGAP6O43182 974 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 TPM1P09493 284 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 ATP1A3P13637 1013 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 RFC4P35249 363 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 PLCD1P51178 756 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 PKN1Q16512 942 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 TTC38Q5R3I4 469 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 SPECC1LQ69YQ0 1117 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 GALNT17Q6IS24 598 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L2Q6R6M4 530 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L1Q7RTZ2 530 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 ZNF804AQ7Z570 1209 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 ANKRD20A12PQ8NF67 263 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 SPATA20Q8TB22 786 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 ERO1AQ96HE7 468 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 MCM9Q9NXL9 1143 aa8.4□□□□□ -1.07
ZNF540-206ENST00000589117 CCNL1Q9UK58 526 aaPredicted RBP8.4□□□□□ -1.07
ZNF540-206ENST00000589117 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.4□□□□□ -1.07
ZNF540-206ENST00000589117 MYH14Q7Z406 1995 aaKnown RBP8.39□□□□□ -1.07
ZNF540-206ENST00000589117 ACTN4O43707 911 aaKnown RBP8.39□□□□□ -1.07
ZNF540-206ENST00000589117 STX10O60499 249 aa8.39□□□□□ -1.07
ZNF540-206ENST00000589117 SLU7O95391 586 aaKnown RBP8.39□□□□□ -1.07
ZNF540-206ENST00000589117 HMGB2P26583 209 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms