RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 CCDC129Q6ZRS4 1044 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 MSL3Q8N5Y2 521 aaKnown RBP13.34□□□□□ -0.27
VPS4B-202ENST00000588059 CCDC17Q96LX7 622 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 FAM184BQ9ULE4 1060 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 MYH7P12883 1935 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 ELP1O95163 1332 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 SYNGAP1Q96PV0 1343 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 TCF20Q9UGU0 1960 aaKnown RBP13.33□□□□□ -0.28
VPS4B-202ENST00000588059 CYP2D7A0A087X1C5 515 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 ADCY6O43306 1168 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 PRKAB2O43741 272 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 DUSP11O75319 330 aaKnown RBP13.33□□□□□ -0.28
VPS4B-202ENST00000588059 EEF2P13639 858 aaKnown RBP13.33□□□□□ -0.28
VPS4B-202ENST00000588059 CSF2RAP15509 400 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 PLA2G5P39877 138 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 HNRNPUQ00839 825 aaKnown RBP eCLIP13.33□□□□□ -0.28
VPS4B-202ENST00000588059 FAM83BQ5T0W9 1011 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 MAMDC4Q6UXC1 1216 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 GLT1D1Q96MS3 346 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 ARMT1Q9H993 441 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 ZHX1Q9UKY1 873 aaPredicted RBP13.33□□□□□ -0.28
VPS4B-202ENST00000588059 EXOC6BQ9Y2D4 811 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 CHD7Q9P2D1 2997 aa13.33□□□□□ -0.28
VPS4B-202ENST00000588059 DNAJC25-GNG10A0A024R161 153 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 GOLIM4O00461 696 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 ASGR1P07306 291 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 C6orf222P0C671 652 aaPredicted RBP13.32□□□□□ -0.28
VPS4B-202ENST00000588059 ACRP10323 421 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 CDK8P49336 464 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 MRPS5P82675 430 aaKnown RBP13.32□□□□□ -0.28
VPS4B-202ENST00000588059 CCDC85BQ15834 202 aaPredicted RBP13.32□□□□□ -0.28
VPS4B-202ENST00000588059 CEP85Q6P2H3 762 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 PSRC1Q6PGN9 363 aaPredicted RBP13.32□□□□□ -0.28
VPS4B-202ENST00000588059 C16orf86Q6ZW13 317 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 ZNF365Q70YC5 407 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 ERC1Q8IUD2 1116 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 FAM126BQ8IXS8 530 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 TMEM199Q8N511 208 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 UHRF1Q96T88 793 aaPredicted RBP13.32□□□□□ -0.28
VPS4B-202ENST00000588059 TEX13BQ9BXU2 312 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 PPP1R12CQ9BZL4 782 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 UPF3AQ9H1J1 476 aaKnown RBP13.32□□□□□ -0.28
VPS4B-202ENST00000588059 GOPCQ9HD26 462 aa13.32□□□□□ -0.28
VPS4B-202ENST00000588059 A0A0U1RQG5 324 aaPredicted RBP13.31□□□□□ -0.28
VPS4B-202ENST00000588059 ARVCFO00192 962 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 MBD4O95243 580 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 RLBP1P12271 317 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 RAB30Q15771 203 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 SLFNL1Q499Z3 407 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 C12orf60Q5U649 245 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 SNRNP48Q6IEG0 339 aaKnown RBP13.31□□□□□ -0.28
VPS4B-202ENST00000588059 ITPRIPQ8IWB1 547 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 PCSK9Q8NBP7 692 aaKnown RBP13.31□□□□□ -0.28
VPS4B-202ENST00000588059 DNAJC2Q99543 621 aaKnown RBP13.31□□□□□ -0.28
VPS4B-202ENST00000588059 KANSL2Q9H9L4 492 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 IL1RAPL2Q9NP60 686 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 ATP8A2Q9NTI2 1148 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 RIPK3Q9Y572 518 aa13.31□□□□□ -0.28
VPS4B-202ENST00000588059 REV3LO60673 3130 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 USP17L12C9JPN9 530 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 USP17L21D6R901 530 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 RAD21O60216 631 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 IGFBP4P22692 258 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 CYP2C18P33260 490 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 ACVR2BQ13705 512 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 ZNF467Q7Z7K2 595 aaPredicted RBP13.3□□□□□ -0.28
VPS4B-202ENST00000588059 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS4B-202ENST00000588059 HERVK_113Q902F9 699 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 DDX11Q96FC9 970 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 FGD4Q96M96 766 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 NUP88Q99567 741 aaPredicted RBP13.3□□□□□ -0.28
VPS4B-202ENST00000588059 SLF1Q9BQI6 1058 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 NKX2-4Q9H2Z4 354 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 IL23AQ9NPF7 189 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.3□□□□□ -0.28
VPS4B-202ENST00000588059 CXXC1Q9P0U4 656 aaPredicted RBP13.3□□□□□ -0.28
VPS4B-202ENST00000588059 MSRAQ9UJ68 235 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 YBX2Q9Y2T7 364 aaKnown RBP13.3□□□□□ -0.28
VPS4B-202ENST00000588059 MYH4Q9Y623 1939 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 LRRC37A2A6NM11 1700 aa13.3□□□□□ -0.28
VPS4B-202ENST00000588059 BDP1A6H8Y1 2624 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 APBB1O00213 710 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 CTAGE5O15320 804 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 TLR3O15455 904 aaKnown RBP13.29□□□□□ -0.28
VPS4B-202ENST00000588059 CD4P01730 458 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 ADD2P35612 726 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 GJA9P57773 515 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 CCDC144BQ3MJ40 725 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS4B-202ENST00000588059 FTSJ3Q8IY81 847 aaKnown RBP13.29□□□□□ -0.28
VPS4B-202ENST00000588059 RHPN1Q8TCX5 695 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 VTI1AQ96AJ9 217 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 FAM122AQ96E09 287 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 NECAB3Q96P71 396 aaPredicted RBP13.29□□□□□ -0.28
VPS4B-202ENST00000588059 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS4B-202ENST00000588059 ZBED9Q6R2W3 1325 aa13.29□□□□□ -0.28
VPS4B-202ENST00000588059 GNASQ5JWF2 1037 aa13.28□□□□□ -0.28
VPS4B-202ENST00000588059 AMOTL1Q8IY63 956 aa13.28□□□□□ -0.28
VPS4B-202ENST00000588059 IL27Q8NEV9 243 aa13.28□□□□□ -0.28
VPS4B-202ENST00000588059 KATNBL1Q9H079 304 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms