RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	SUFU	Q9UMX1	484 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SPEF2	Q9C093	1822 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ZNF804B	A4D1E1	1349 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TM4SF1	P30408	202 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CASQ1	P31415	396 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	HIBADH	P31937	336 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	GNG11	P61952	73 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	FMR1	Q06787	632 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SMYD4	Q8IYR2	804 aa	Predicted RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	GOPC	Q9HD26	462 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	INTS13	Q9NVM9	706 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SUN2	Q9UH99	717 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ANKRD36C	Q5JPF3	1778 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	HMGB1P1	B2RPK0	211 aa	Predicted RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	WNT7A	O00755	349 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	POLR2D	O15514	142 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	AFM	P43652	599 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	DDR1	Q08345	913 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	UBE4A	Q14139	1066 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	OLFM4	Q6UX06	510 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	JMY	Q8N9B5	988 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CCDC150	Q8NCX0	1101 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SAMSN1	Q9NSI8	373 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	KCNH3	Q9ULD8	1083 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	G3BP2	Q9UN86	482 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	MYH7	P12883	1935 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ETF1	P62495	437 aa	Known RBP	13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	MYL5	Q02045	173 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	SYCP1	Q15431	976 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	EARS2	Q5JPH6	523 aa	Known RBP	13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ATL3	Q6DD88	541 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	COL23A1	Q86Y22	540 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	LZTFL1	Q9NQ48	299 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	IRAK4	Q9NWZ3	460 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	C6orf229	H3BNL8	230 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	EN1	Q05925	392 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	AKNAD1	Q5T1N1	836 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	TRIM65	Q6PJ69	517 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	DIS3L2	Q8IYB7	885 aa	Known RBP	13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	AGBL1	Q96MI9	1066 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	SERTAD1	Q9UHV2	236 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PCDHB6	Q9Y5E3	794 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	FHOD1	Q9Y613	1164 aa		13.08	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	OAT	P04181	439 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PRDX5	P30044	214 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	MFSD6	Q6ZSS7	791 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	IMPACT	Q9P2X3	320 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	RIMBP2	O15034	1052 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ADAMTS3	O15072	1205 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PNMA6A	P0CW24	399 aa	Predicted RBP	13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	TRIM29	Q14134	588 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	REXO1L1P	Q8IX06	675 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	KLHL23	Q8NBE8	558 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	NEK11	Q8NG66	645 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	INO80B	Q9C086	356 aa	Predicted RBP	13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	NFE2L3	Q9Y4A8	694 aa		13.07	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	TULP2	O00295	520 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	UFL1	O94874	794 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	MMP10	P09238	476 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	SSRP1	Q08945	709 aa	Known RBP	13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	GRAP	Q13588	217 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	CC2D1A	Q6P1N0	951 aa	Predicted RBP	13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	GRAPL	Q8TC17	118 aa	Predicted RBP	13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ANKRD2	Q9GZV1	360 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PRR12	Q9ULL5	1215 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	VWA3A	A6NCI4	1184 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	NMT2	O60551	498 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PLA2G4A	P47712	749 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	CCDC93	Q567U6	631 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ZNF384	Q8TF68	577 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	VPS54	Q9P1Q0	977 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	HPSE	Q9Y251	543 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PPP2R2C	Q9Y2T4	447 aa		13.06	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	DDX60	Q8IY21	1712 aa	Known RBP	13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	TEX33	O43247	280 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	VEGFA	P15692	232 aa	Predicted RBP	13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ARL10	Q8N8L6	244 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	L2HGDH	Q9H9P8	463 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	TAF1L	Q8IZX4	1826 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	COL1A1	P02452	1464 aa	Predicted RBP	13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	RTL9	Q8NET4	1388 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	SOWAHD	A6NJG2	315 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PLEKHA8P1	O95397	391 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	PSMD2	Q13200	908 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	WTAP	Q15007	396 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	RTN1	Q16799	776 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	SGMS1	Q86VZ5	419 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	TMEM87B	Q96K49	555 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	TIGD1	Q96MW7	591 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	MED4	Q9NPJ6	270 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	CHCHD3	Q9NX63	227 aa	Known RBP	13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	ECM29	Q5VYK3	1845 aa		13.05	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	MAGEB6P1	A0A0J9YX57	407 aa		13.04	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063		H0YHG0	523 aa		13.04	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	SASH3	O75995	380 aa		13.04	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	FMNL1	O95466	1100 aa	Predicted RBP	13.04	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	H2AFX	P16104	143 aa	Predicted RBP	13.04	□□□□□ -0.32
CDK5RAP3-231	ENST00000584063	SARNP	P82979	210 aa	Known RBP	13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms