RNA–Protein interactions for RNA: ENST00000579609.5

PPP4R1-213, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 3

Gene PPP4R1, Length 565 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-213	ENST00000579609	KRT25	Q7Z3Z0	450 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	SH3RF1	Q7Z6J0	888 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	CCDC24	Q8N4L8	307 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	AOPEP	Q8N6M6	819 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	CCDC112	Q8NEF3	446 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	SMARCE1	Q969G3	411 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	CNKSR1	Q969H4	720 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	NAP1L4	Q99733	375 aa	Known RBP	10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	TMEM47	Q9BQJ4	181 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	ZMYND12	Q9H0C1	365 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	VPS33B	Q9H267	617 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	OCEL1	Q9H607	264 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	SRCAP	Q6ZRS2	3230 aa		10.09	□□□□□ -0.79
PPP4R1-213	ENST00000579609	TULP1	O00294	542 aa	Predicted RBP	10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CCP110	O43303	1012 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	GABBR2	O75899	941 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	HLA-DOA	P06340	250 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MMP14	P50281	582 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	DSG2	Q14126	1118 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	LONRF3	Q496Y0	759 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	GPATCH4	Q5T3I0	446 aa	Known RBP	10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	IER5L	Q5T953	404 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	COL23A1	Q86Y22	540 aa	Predicted RBP	10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	DRC7	Q8IY82	874 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	IQUB	Q8NA54	791 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	OXER1	Q8TDS5	423 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	TEKT1	Q969V4	418 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	ZDHHC15	Q96MV8	337 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	RIOX1	Q9H6W3	641 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	C6orf50	Q9HD87	102 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	RMND1	Q9NWS8	449 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	PCDHA5	Q9Y5H7	936 aa		10.08	□□□□□ -0.8
PPP4R1-213	ENST00000579609	KIF13B	Q9NQT8	1826 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CCDC194	A0A1B0GVG4	234 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	ZNF827	Q17R98	1081 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CCDC186	Q7Z3E2	898 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MAPKAPK5	Q8IW41	473 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	LRRC8A	Q8IWT6	810 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SHISA4	Q96DD7	197 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	RRP36	Q96EU6	259 aa	Known RBP	10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CLIC6	Q96NY7	704 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	IDI2	Q9BXS1	227 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CCSER1	Q9C0I3	900 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CSRNP2	Q9H175	543 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	KCNF1	Q9H3M0	494 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SEC63	Q9UGP8	760 aa	Known RBP	10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SERPINB13	Q9UIV8	391 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MYH4	Q9Y623	1939 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	ARFGEF1	Q9Y6D6	1849 aa		10.07	□□□□□ -0.8
PPP4R1-213	ENST00000579609	ATRNL1	Q5VV63	1379 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SIPA1L1	O43166	1804 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	KLRF2	D3W0D1	207 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609		H0YIN7	160 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	STXBP3	O00186	592 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	POLR2D	O15514	142 aa	Known RBP	10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	APBA3	O96018	575 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	RXRB	P28702	533 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	PLCD1	P51178	756 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	GTF2I	P78347	998 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SPAG1	Q07617	926 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	GRIK5	Q16478	980 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MTERF4	Q7Z6M4	381 aa	Known RBP	10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	FCHSD1	Q86WN1	690 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CCDC82	Q8N4S0	544 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CTAGE1	Q96RT6	745 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	TTC12	Q9H892	705 aa	Predicted RBP	10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MTMR4	Q9NYA4	1195 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SERPINA10	Q9UK55	444 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	BOLA1	Q9Y3E2	137 aa		10.06	□□□□□ -0.8
PPP4R1-213	ENST00000579609	PSD	A5PKW4	1024 aa	Predicted RBP	10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	UBE2Q2L	H0YL09	131 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SMIM22	K7EJ46	135 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	DYNC1I1	O14576	645 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	NMT2	O60551	498 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	TTLL1	O95922	423 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MMP10	P09238	476 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	PTGS1	P23219	599 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	DPYD	Q12882	1025 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	TRAF1	Q13077	416 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	PTGDR	Q13258	359 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	PNOC	Q13519	176 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	NONO	Q15233	471 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SOGA3	Q5TF21	947 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	FOXP4	Q8IVH2	680 aa	Predicted RBP	10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	CMTR1	Q8N1G2	835 aa	Known RBP	10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	C4orf32	Q8N8J7	132 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MKL1	Q969V6	931 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	DYNLL2	Q96FJ2	89 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	EMILIN3	Q9NT22	766 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	SERTAD1	Q9UHV2	236 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	MAN1B1	Q9UKM7	699 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	STX8	Q9UNK0	236 aa		10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	TTF2	Q9UNY4	1162 aa	Known RBP	10.05	□□□□□ -0.8
PPP4R1-213	ENST00000579609	USP17L3	A6NCW0	530 aa		10.04	□□□□□ -0.8
PPP4R1-213	ENST00000579609	USP17L4	A6NCW7	530 aa		10.04	□□□□□ -0.8
PPP4R1-213	ENST00000579609		G3V3G9	751 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms