RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DIAPH3Q9NSV4 1193 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 RBM27Q9P2N5 1060 aaKnown RBP9.63□□□□□ -0.87
VPS53-214ENST00000572607 A0A1W2PRG0 241 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 SMIM22K7EJ46 135 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 WDR46O15213 610 aaKnown RBP9.62□□□□□ -0.87
VPS53-214ENST00000572607 PRDM1O75626 825 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 FLOT1O75955 427 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 TSPY3P0CV98 308 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 TSPY8P0CW00 308 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 NMIQ13287 307 aaPredicted RBP9.62□□□□□ -0.87
VPS53-214ENST00000572607 COG2Q14746 738 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 WDR78Q5VTH9 848 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 TYW1BQ6NUM6 668 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 CLEC10AQ8IUN9 316 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 PXYLP1Q8TE99 480 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 HOXC10Q9NYD6 342 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 RBPJLQ9UBG7 517 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 RABGEF1Q9UJ41 708 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 GABRQQ9UN88 632 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 RABGAP1Q9Y3P9 1069 aa9.62□□□□□ -0.87
VPS53-214ENST00000572607 CCDC171Q6TFL3 1326 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 SDSP20132 328 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 RASA1P20936 1047 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 LBX2Q6XYB7 198 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 SPICE1Q8N0Z3 855 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 MB21D1Q8N884 522 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 NKX2-3Q8TAU0 364 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 FAM227BQ96M60 508 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 NUDT12Q9BQG2 462 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 TXNRD2Q9NNW7 524 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 IVNS1ABPQ9Y6Y0 642 aa9.61□□□□□ -0.87
VPS53-214ENST00000572607 UNC80Q8N2C7 3258 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 A0A0D9SFI3 127 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 TSPY2A6NKD2 308 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 SPDYE16A6NNV3 312 aaPredicted RBP9.6□□□□□ -0.87
VPS53-214ENST00000572607 TTLL1O95922 423 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 INHAP05111 366 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 COL9A1P20849 921 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 RGS2P41220 211 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 CAMK2BQ13554 666 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 GPR142Q7Z601 462 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 PLEKHH3Q7Z736 793 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 TRMT44Q8IYL2 757 aaKnown RBP9.6□□□□□ -0.87
VPS53-214ENST00000572607 RNF208Q9H0X6 261 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 TOMM22Q9NS69 142 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 NYAP2Q9P242 653 aa9.6□□□□□ -0.87
VPS53-214ENST00000572607 CTDP1Q9Y5B0 961 aaPredicted RBP9.6□□□□□ -0.87
VPS53-214ENST00000572607 BAZ2AQ9UIF9 1905 aaKnown RBP9.59□□□□□ -0.87
VPS53-214ENST00000572607 SOX1O00570 391 aaPredicted RBP9.59□□□□□ -0.87
VPS53-214ENST00000572607 PEX10O60683 326 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 HMGCRP04035 888 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 HSPD1P10809 573 aaKnown RBP9.59□□□□□ -0.87
VPS53-214ENST00000572607 CCL5P13501 91 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 ELNP15502 786 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 ZKSCAN1P17029 563 aaPredicted RBP9.59□□□□□ -0.87
VPS53-214ENST00000572607 CYP2B6P20813 491 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 TFAP4Q01664 338 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 PLS1Q14651 629 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 ALX1Q15699 326 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 Q3C1V9 767 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 VPS53Q5VIR6 699 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 CWC27Q6UX04 472 aaKnown RBP9.59□□□□□ -0.87
VPS53-214ENST00000572607 SIAH1Q8IUQ4 282 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 NEDD1Q8NHV4 660 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 CEP95Q96GE4 821 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS53-214ENST00000572607 PORCNQ9H237 461 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 CLIP2Q9UDT6 1046 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 ISY1Q9ULR0 285 aaKnown RBP9.59□□□□□ -0.87
VPS53-214ENST00000572607 SYNPO2Q9UMS6 1093 aa9.59□□□□□ -0.87
VPS53-214ENST00000572607 ZMYM6O95789 1325 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 CUL9Q8IWT3 2517 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 IGKV6D-41A0A0C4DH26 115 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 F5H6K3 240 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 RANBP6O60518 1105 aaKnown RBP9.58□□□□□ -0.88
VPS53-214ENST00000572607 CNMDO75829 334 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 FGAP02671 866 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 GJB1P08034 283 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 CAPN2P17655 700 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 COPB2P35606 906 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 CTDSPL2Q05D32 466 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 KLRC3Q07444 240 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 PROX2Q3B8N5 592 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 FAM47AQ5JRC9 791 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 RRP12Q5JTH9 1297 aaKnown RBP9.58□□□□□ -0.88
VPS53-214ENST00000572607 FAM83BQ5T0W9 1011 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 TTC22Q5TAA0 569 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 ZNF589Q86UQ0 364 aaPredicted RBP9.58□□□□□ -0.88
VPS53-214ENST00000572607 LRRC47Q8N1G4 583 aaKnown RBP9.58□□□□□ -0.88
VPS53-214ENST00000572607 ATG4CQ96DT6 458 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 APBA2Q99767 749 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 SPATC1LQ9H0A9 340 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 RNF41Q9H4P4 317 aaPredicted RBP9.58□□□□□ -0.88
VPS53-214ENST00000572607 MROH8Q9H579 483 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 SLC5A4Q9NY91 659 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 MTMR4Q9NYA4 1195 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 BTBD7Q9P203 1132 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 ANAPC4Q9UJX5 808 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 GJD2Q9UKL4 321 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 STX8Q9UNK0 236 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms