RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ARHGEF25Q86VW2 580 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 NME9Q86XW9 330 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 CCDC146Q8IYE0 955 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 MRFAP1L1Q96HT8 127 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 CCDC136Q96JN2 1154 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 NACC1Q96RE7 527 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 SPOCK3Q9BQ16 436 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 PLCD4Q9BRC7 762 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 CCDC86Q9H6F5 360 aaKnown RBP7.81□□□□□ -1.16
VPS53-212ENST00000572259 IFT57Q9NWB7 429 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 ADAMTS1Q9UHI8 967 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 PCDHA4Q9UN74 947 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 MRPL42Q9Y6G3 142 aaKnown RBP7.81□□□□□ -1.16
VPS53-212ENST00000572259 AATKQ6ZMQ8 1374 aa7.81□□□□□ -1.16
VPS53-212ENST00000572259 PIK3C2AO00443 1686 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 DNAJC6O75061 913 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 BPNT1O95861 308 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 PTMSP20962 102 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 TNNI2P48788 182 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 FBXL19Q6PCT2 694 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 SHISA2Q6UWI4 295 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 MPRIPQ6WCQ1 1025 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 TOM1L2Q6ZVM7 507 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 CCDC84Q86UT8 332 aaPredicted RBP7.8□□□□□ -1.16
VPS53-212ENST00000572259 TCP11L2Q8N4U5 519 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 GPBAR1Q8TDU6 330 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 CD163L1Q9NR16 1453 aa7.8□□□□□ -1.16
VPS53-212ENST00000572259 CGNL1Q0VF96 1302 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 SPATA31A1Q5TZJ5 1347 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 SLIT3O75094 1523 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 RNF225M0QZC1 329 aaPredicted RBP7.79□□□□□ -1.16
VPS53-212ENST00000572259 WISP1O95388 367 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 CTSBP07858 339 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 AMPHP49418 695 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 PAK2Q13177 524 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 BNC2Q6ZN30 1099 aaPredicted RBP7.79□□□□□ -1.16
VPS53-212ENST00000572259 KRT27Q7Z3Y8 459 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 ALYREFQ86V81 257 aaKnown RBP7.79□□□□□ -1.16
VPS53-212ENST00000572259 VPS37DQ86XT2 251 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 RNF208Q9H0X6 261 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 SPC25Q9HBM1 224 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 CYP4F12Q9HCS2 524 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 GABBR1Q9UBS5 961 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 PRKAB1Q9Y478 270 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 LAS1LQ9Y4W2 734 aaKnown RBP7.79□□□□□ -1.16
VPS53-212ENST00000572259 NRKQ7Z2Y5 1582 aa7.79□□□□□ -1.16
VPS53-212ENST00000572259 RGS12O14924 1447 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 NRAPQ86VF7 1730 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 C9orf172C9J069 976 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 FYB1O15117 783 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 ZNF862O60290 1169 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 AOC2O75106 756 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 PPFIA4O75335 1185 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 DLGAP3O95886 979 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 F13A1P00488 732 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 COL8A1P27658 744 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 NRG1Q02297 640 aaPredicted RBP7.78□□□□□ -1.16
VPS53-212ENST00000572259 FAM196AQ6ZSG2 479 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 RPUSD2Q8IZ73 545 aaKnown RBP7.78□□□□□ -1.16
VPS53-212ENST00000572259 GATAD2BQ8WXI9 593 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 LENG1Q96BZ8 264 aaPredicted RBP7.78□□□□□ -1.16
VPS53-212ENST00000572259 WDR89Q96FK6 387 aaPredicted RBP7.78□□□□□ -1.16
VPS53-212ENST00000572259 DDX56Q9NY93 547 aaKnown RBP7.78□□□□□ -1.16
VPS53-212ENST00000572259 WDR17Q8IZU2 1322 aa7.78□□□□□ -1.16
VPS53-212ENST00000572259 CAMTA1Q9Y6Y1 1673 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 GLI3P10071 1580 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 A0A0U1RQG5 324 aaPredicted RBP7.77□□□□□ -1.17
VPS53-212ENST00000572259 MEGF11A6BM72 1044 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 SELPP16109 830 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 GARTP22102 1010 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 TBX4P57082 545 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 APOBRQ0VD83 1088 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 LONRF3Q496Y0 759 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 AKAP4Q5JQC9 854 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 FDX2Q6P4F2 183 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 KIAA1211Q6ZU35 1233 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.77□□□□□ -1.17
VPS53-212ENST00000572259 TMEM130Q8N3G9 435 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 C12orf50Q8NA57 414 aaPredicted RBP7.77□□□□□ -1.17
VPS53-212ENST00000572259 IP6K1Q92551 441 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 GAL3ST3Q96A11 431 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 ELMO3Q96BJ8 720 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 GPRASP2Q96D09 838 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 SGSM3Q96HU1 749 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 WDR18Q9BV38 432 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 NT5C1AQ9BXI3 368 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 TMPRSS13Q9BYE2 586 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 AKTIPQ9H8T0 292 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 PANK3Q9H999 370 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 KCNQ5Q9NR82 932 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 KNSTRNQ9Y448 316 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 CRB1P82279 1406 aa7.77□□□□□ -1.17
VPS53-212ENST00000572259 LTN1O94822 1766 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 RGPD5Q99666 1765 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 USP54Q70EL1 1684 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 BRWD3Q6RI45 1802 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 F8W735 103 aaPredicted RBP7.76□□□□□ -1.17
VPS53-212ENST00000572259 TLR3O15455 904 aaKnown RBP7.76□□□□□ -1.17
VPS53-212ENST00000572259 GREM1O60565 184 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 PTPN11Q06124 597 aaPredicted RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms